Strain Fitness in Escherichia coli BL21 around ECD_04099

Experiment: Mixed culture, Halobacteriovorax-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04098 and ECD_04099 overlap by 14 nucleotidesECD_04099 and ECD_04100 are separated by 32 nucleotides ECD_04098: ECD_04098 - putative sugar ABC transporter permease, at 4,364,189 to 4,365,211 _04098 ECD_04099: ECD_04099 - putative sugar ABC transporter permease, at 4,365,198 to 4,366,193 _04099 ECD_04100: ECD_04100 - fructose-1,6-bisphosphatase I, at 4,366,226 to 4,367,224 _04100 Position (kb) 4365 4366 4367Strain fitness (log2 ratio) -1 0 1at 4364.212 kb on + strandat 4364.213 kb on - strandat 4364.355 kb on + strand, within ECD_04098at 4364.356 kb on - strand, within ECD_04098at 4364.356 kb on - strand, within ECD_04098at 4364.565 kb on + strand, within ECD_04098at 4364.671 kb on + strand, within ECD_04098at 4364.873 kb on + strand, within ECD_04098at 4364.912 kb on - strand, within ECD_04098at 4365.025 kb on + strand, within ECD_04098at 4365.026 kb on - strand, within ECD_04098at 4365.058 kb on + strand, within ECD_04098at 4365.120 kb on + strandat 4365.182 kb on - strandat 4365.193 kb on + strandat 4365.193 kb on + strandat 4365.209 kb on + strandat 4365.253 kb on - strandat 4365.510 kb on - strand, within ECD_04099at 4365.548 kb on + strand, within ECD_04099at 4365.591 kb on + strand, within ECD_04099at 4365.592 kb on - strand, within ECD_04099at 4365.633 kb on + strand, within ECD_04099at 4365.682 kb on + strand, within ECD_04099at 4365.683 kb on - strand, within ECD_04099at 4365.725 kb on + strand, within ECD_04099at 4365.726 kb on - strand, within ECD_04099at 4365.763 kb on + strand, within ECD_04099at 4365.764 kb on - strand, within ECD_04099at 4365.764 kb on - strand, within ECD_04099at 4365.764 kb on - strand, within ECD_04099at 4365.765 kb on + strand, within ECD_04099at 4365.765 kb on + strand, within ECD_04099at 4365.766 kb on - strand, within ECD_04099at 4365.766 kb on - strand, within ECD_04099at 4365.828 kb on - strand, within ECD_04099at 4365.837 kb on + strand, within ECD_04099at 4365.838 kb on - strand, within ECD_04099at 4365.838 kb on - strand, within ECD_04099at 4365.838 kb on - strand, within ECD_04099at 4365.838 kb on - strand, within ECD_04099at 4365.839 kb on + strand, within ECD_04099at 4365.839 kb on + strand, within ECD_04099at 4365.839 kb on + strand, within ECD_04099at 4365.839 kb on + strand, within ECD_04099at 4365.839 kb on + strand, within ECD_04099at 4365.840 kb on - strand, within ECD_04099at 4365.891 kb on - strand, within ECD_04099at 4365.952 kb on + strand, within ECD_04099at 4365.991 kb on + strand, within ECD_04099at 4365.991 kb on + strand, within ECD_04099at 4365.994 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.038 kb on + strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.039 kb on - strand, within ECD_04099at 4366.040 kb on + strand, within ECD_04099at 4366.117 kb on + strandat 4366.274 kb on - strandat 4366.274 kb on - strandat 4366.336 kb on + strand, within ECD_04100at 4366.336 kb on + strand, within ECD_04100at 4366.337 kb on - strand, within ECD_04100at 4366.404 kb on + strand, within ECD_04100at 4366.449 kb on + strand, within ECD_04100at 4366.456 kb on - strand, within ECD_04100at 4366.460 kb on - strand, within ECD_04100at 4366.510 kb on - strand, within ECD_04100at 4366.519 kb on + strand, within ECD_04100at 4366.562 kb on - strand, within ECD_04100at 4366.591 kb on + strand, within ECD_04100at 4366.591 kb on + strand, within ECD_04100at 4366.597 kb on - strand, within ECD_04100at 4366.687 kb on - strand, within ECD_04100at 4366.690 kb on + strand, within ECD_04100at 4366.719 kb on + strand, within ECD_04100at 4366.732 kb on + strand, within ECD_04100at 4366.743 kb on + strand, within ECD_04100at 4366.745 kb on + strand, within ECD_04100at 4366.834 kb on - strand, within ECD_04100at 4366.834 kb on - strand, within ECD_04100at 4367.084 kb on - strand, within ECD_04100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
remove
4,364,212 + -0.1
4,364,213 - -0.1
4,364,355 + ECD_04098 0.16 -0.1
4,364,356 - ECD_04098 0.16 -0.4
4,364,356 - ECD_04098 0.16 +0.1
4,364,565 + ECD_04098 0.37 -0.5
4,364,671 + ECD_04098 0.47 -0.1
4,364,873 + ECD_04098 0.67 -0.1
4,364,912 - ECD_04098 0.71 -0.2
4,365,025 + ECD_04098 0.82 -0.6
4,365,026 - ECD_04098 0.82 +0.3
4,365,058 + ECD_04098 0.85 -0.5
4,365,120 + -0.4
4,365,182 - -0.1
4,365,193 + -0.7
4,365,193 + +0.2
4,365,209 + +1.2
4,365,253 - -0.0
4,365,510 - ECD_04099 0.31 +0.2
4,365,548 + ECD_04099 0.35 +0.2
4,365,591 + ECD_04099 0.39 -0.5
4,365,592 - ECD_04099 0.40 -0.2
4,365,633 + ECD_04099 0.44 +0.6
4,365,682 + ECD_04099 0.49 +0.3
4,365,683 - ECD_04099 0.49 -0.4
4,365,725 + ECD_04099 0.53 +0.6
4,365,726 - ECD_04099 0.53 +0.1
4,365,763 + ECD_04099 0.57 +0.5
4,365,764 - ECD_04099 0.57 +0.4
4,365,764 - ECD_04099 0.57 +0.5
4,365,764 - ECD_04099 0.57 -0.3
4,365,765 + ECD_04099 0.57 -0.2
4,365,765 + ECD_04099 0.57 -0.5
4,365,766 - ECD_04099 0.57 -0.4
4,365,766 - ECD_04099 0.57 +0.3
4,365,828 - ECD_04099 0.63 -0.5
4,365,837 + ECD_04099 0.64 +0.3
4,365,838 - ECD_04099 0.64 +0.1
4,365,838 - ECD_04099 0.64 +0.6
4,365,838 - ECD_04099 0.64 +0.4
4,365,838 - ECD_04099 0.64 +0.4
4,365,839 + ECD_04099 0.64 -0.2
4,365,839 + ECD_04099 0.64 -0.5
4,365,839 + ECD_04099 0.64 -0.1
4,365,839 + ECD_04099 0.64 -0.6
4,365,839 + ECD_04099 0.64 -1.3
4,365,840 - ECD_04099 0.64 -1.0
4,365,891 - ECD_04099 0.70 +0.6
4,365,952 + ECD_04099 0.76 +0.0
4,365,991 + ECD_04099 0.80 +0.4
4,365,991 + ECD_04099 0.80 -0.4
4,365,994 + ECD_04099 0.80 -1.0
4,366,038 + ECD_04099 0.84 +0.3
4,366,038 + ECD_04099 0.84 -0.2
4,366,038 + ECD_04099 0.84 +0.0
4,366,038 + ECD_04099 0.84 +0.4
4,366,038 + ECD_04099 0.84 -0.2
4,366,038 + ECD_04099 0.84 -0.5
4,366,039 - ECD_04099 0.84 +0.2
4,366,039 - ECD_04099 0.84 -0.4
4,366,039 - ECD_04099 0.84 +0.2
4,366,039 - ECD_04099 0.84 +0.1
4,366,039 - ECD_04099 0.84 +0.0
4,366,039 - ECD_04099 0.84 +0.9
4,366,039 - ECD_04099 0.84 +0.3
4,366,039 - ECD_04099 0.84 -0.8
4,366,039 - ECD_04099 0.84 -0.2
4,366,040 + ECD_04099 0.85 -0.1
4,366,117 + +1.2
4,366,274 - +0.1
4,366,274 - -0.4
4,366,336 + ECD_04100 0.11 -0.7
4,366,336 + ECD_04100 0.11 -0.6
4,366,337 - ECD_04100 0.11 -0.9
4,366,404 + ECD_04100 0.18 -0.7
4,366,449 + ECD_04100 0.22 +0.3
4,366,456 - ECD_04100 0.23 -1.0
4,366,460 - ECD_04100 0.23 -0.6
4,366,510 - ECD_04100 0.28 -0.5
4,366,519 + ECD_04100 0.29 -1.0
4,366,562 - ECD_04100 0.34 -0.5
4,366,591 + ECD_04100 0.37 +0.7
4,366,591 + ECD_04100 0.37 -0.6
4,366,597 - ECD_04100 0.37 -0.3
4,366,687 - ECD_04100 0.46 -0.7
4,366,690 + ECD_04100 0.46 +0.3
4,366,719 + ECD_04100 0.49 -0.3
4,366,732 + ECD_04100 0.51 -0.2
4,366,743 + ECD_04100 0.52 -0.6
4,366,745 + ECD_04100 0.52 -0.7
4,366,834 - ECD_04100 0.61 +0.8
4,366,834 - ECD_04100 0.61 -0.1
4,367,084 - ECD_04100 0.86 -1.1

Or see this region's nucleotide sequence