Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03536 and ECD_03537 overlap by 103 nucleotides ECD_03537 and ECD_03538 overlap by 4 nucleotides ECD_03538 and ECD_03539 overlap by 34 nucleotides ECD_03539 and ECD_03540 are separated by 84 nucleotides
ECD_03536: ECD_03536 - IS30 transposase, at 3,721,519 to 3,722,643
_03536
ECD_03537: ECD_03537 - putative uncharacterized protein, yeeV-like protein, at 3,722,541 to 3,722,906
_03537
ECD_03538: ECD_03538 - hypothetical protein, at 3,722,903 to 3,723,391
_03538
ECD_03539: ECD_03539 - Aec78, at 3,723,358 to 3,723,600
_03539
ECD_03540: ECD_03540 - hypothetical protein, at 3,723,685 to 3,724,530
_03540
Position (kb)
3722
3723
3724 Strain fitness (log2 ratio)
-1
0
1 at 3721.905 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3722.039 kb on - strand, within ECD_03536 at 3722.060 kb on + strand, within ECD_03536 at 3722.073 kb on + strand, within ECD_03536 at 3722.073 kb on + strand, within ECD_03536 at 3722.074 kb on - strand, within ECD_03536 at 3722.074 kb on - strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.076 kb on - strand, within ECD_03536 at 3722.098 kb on - strand, within ECD_03536 at 3722.142 kb on + strand, within ECD_03536 at 3722.148 kb on + strand, within ECD_03536 at 3722.149 kb on - strand, within ECD_03536 at 3722.149 kb on - strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.231 kb on + strand, within ECD_03536 at 3722.232 kb on - strand, within ECD_03536 at 3722.256 kb on + strand, within ECD_03536 at 3722.257 kb on - strand, within ECD_03536 at 3722.258 kb on + strand, within ECD_03536 at 3722.258 kb on + strand, within ECD_03536 at 3722.259 kb on - strand, within ECD_03536 at 3722.288 kb on - strand, within ECD_03536 at 3722.289 kb on + strand, within ECD_03536 at 3722.289 kb on + strand, within ECD_03536 at 3722.424 kb on - strand, within ECD_03536 at 3722.430 kb on + strand, within ECD_03536 at 3722.513 kb on + strand, within ECD_03536 at 3722.524 kb on + strand, within ECD_03536 at 3722.684 kb on + strand, within ECD_03537 at 3722.685 kb on - strand, within ECD_03537 at 3722.746 kb on + strand, within ECD_03537 at 3722.746 kb on + strand, within ECD_03537 at 3722.751 kb on - strand, within ECD_03537 at 3722.807 kb on + strand, within ECD_03537 at 3722.807 kb on + strand, within ECD_03537 at 3722.853 kb on + strand, within ECD_03537 at 3722.854 kb on - strand, within ECD_03537 at 3722.863 kb on + strand, within ECD_03537 at 3722.863 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.868 kb on + strand, within ECD_03537 at 3722.868 kb on - strand, within ECD_03537 at 3722.990 kb on - strand, within ECD_03538 at 3723.033 kb on + strand, within ECD_03538 at 3723.034 kb on - strand, within ECD_03538 at 3723.034 kb on - strand, within ECD_03538 at 3723.074 kb on - strand, within ECD_03538 at 3723.105 kb on + strand, within ECD_03538 at 3723.105 kb on + strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.124 kb on + strand, within ECD_03538 at 3723.124 kb on + strand, within ECD_03538 at 3723.125 kb on - strand, within ECD_03538 at 3723.172 kb on + strand, within ECD_03538 at 3723.225 kb on + strand, within ECD_03538 at 3723.226 kb on - strand, within ECD_03538 at 3723.310 kb on + strand, within ECD_03538 at 3723.321 kb on - strand, within ECD_03538 at 3723.643 kb on - strand at 3723.684 kb on - strand at 3723.684 kb on - strand at 3723.834 kb on - strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.049 kb on - strand, within ECD_03540 at 3724.049 kb on - strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.144 kb on - strand, within ECD_03540 at 3724.351 kb on - strand, within ECD_03540
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 3,721,905 - ECD_03536 0.34 +0.2 3,721,962 - ECD_03536 0.39 +0.1 3,721,962 - ECD_03536 0.39 -0.5 3,721,962 - ECD_03536 0.39 +0.2 3,722,039 - ECD_03536 0.46 +0.3 3,722,060 + ECD_03536 0.48 +0.3 3,722,073 + ECD_03536 0.49 +0.4 3,722,073 + ECD_03536 0.49 +0.3 3,722,074 - ECD_03536 0.49 -0.3 3,722,074 - ECD_03536 0.49 +0.0 3,722,075 + ECD_03536 0.49 +0.2 3,722,075 + ECD_03536 0.49 +0.2 3,722,075 + ECD_03536 0.49 +0.3 3,722,076 - ECD_03536 0.50 +0.7 3,722,098 - ECD_03536 0.51 +0.5 3,722,142 + ECD_03536 0.55 +0.0 3,722,148 + ECD_03536 0.56 +0.8 3,722,149 - ECD_03536 0.56 +0.8 3,722,149 - ECD_03536 0.56 +0.4 3,722,153 + ECD_03536 0.56 -0.4 3,722,153 + ECD_03536 0.56 +0.1 3,722,153 + ECD_03536 0.56 +0.0 3,722,154 - ECD_03536 0.56 +0.4 3,722,154 - ECD_03536 0.56 -0.4 3,722,154 - ECD_03536 0.56 +0.2 3,722,231 + ECD_03536 0.63 +0.4 3,722,232 - ECD_03536 0.63 -0.6 3,722,256 + ECD_03536 0.66 -0.1 3,722,257 - ECD_03536 0.66 +0.2 3,722,258 + ECD_03536 0.66 +0.2 3,722,258 + ECD_03536 0.66 -0.1 3,722,259 - ECD_03536 0.66 +0.3 3,722,288 - ECD_03536 0.68 -0.1 3,722,289 + ECD_03536 0.68 +0.4 3,722,289 + ECD_03536 0.68 +0.2 3,722,424 - ECD_03536 0.80 -0.2 3,722,430 + ECD_03536 0.81 +0.5 3,722,513 + ECD_03536 0.88 +0.2 3,722,524 + ECD_03536 0.89 +0.4 3,722,684 + ECD_03537 0.39 +0.5 3,722,685 - ECD_03537 0.39 +0.4 3,722,746 + ECD_03537 0.56 -0.3 3,722,746 + ECD_03537 0.56 -0.2 3,722,751 - ECD_03537 0.57 +0.2 3,722,807 + ECD_03537 0.73 +0.1 3,722,807 + ECD_03537 0.73 -0.2 3,722,853 + ECD_03537 0.85 +0.3 3,722,854 - ECD_03537 0.86 +0.4 3,722,863 + ECD_03537 0.88 +0.2 3,722,863 + ECD_03537 0.88 +0.7 3,722,867 + ECD_03537 0.89 +0.0 3,722,867 + ECD_03537 0.89 +0.1 3,722,867 + ECD_03537 0.89 -0.9 3,722,868 + ECD_03537 0.89 -0.1 3,722,868 - ECD_03537 0.89 +0.5 3,722,990 - ECD_03538 0.18 +0.1 3,723,033 + ECD_03538 0.27 +0.2 3,723,034 - ECD_03538 0.27 +0.3 3,723,034 - ECD_03538 0.27 +0.5 3,723,074 - ECD_03538 0.35 +1.1 3,723,105 + ECD_03538 0.41 -0.2 3,723,105 + ECD_03538 0.41 +0.1 3,723,106 - ECD_03538 0.42 +0.2 3,723,106 - ECD_03538 0.42 -0.7 3,723,106 - ECD_03538 0.42 +0.5 3,723,124 + ECD_03538 0.45 +0.4 3,723,124 + ECD_03538 0.45 +0.2 3,723,125 - ECD_03538 0.45 -0.0 3,723,172 + ECD_03538 0.55 +0.2 3,723,225 + ECD_03538 0.66 +0.4 3,723,226 - ECD_03538 0.66 -0.2 3,723,310 + ECD_03538 0.83 -0.1 3,723,321 - ECD_03538 0.85 +0.5 3,723,643 - +0.7 3,723,684 - -0.1 3,723,684 - +0.5 3,723,834 - ECD_03540 0.18 -0.1 3,724,026 + ECD_03540 0.40 -0.3 3,724,026 + ECD_03540 0.40 -0.4 3,724,026 + ECD_03540 0.40 +0.3 3,724,049 - ECD_03540 0.43 +0.1 3,724,049 - ECD_03540 0.43 -0.1 3,724,143 + ECD_03540 0.54 -0.1 3,724,143 + ECD_03540 0.54 +0.5 3,724,143 + ECD_03540 0.54 +0.6 3,724,144 - ECD_03540 0.54 -1.0 3,724,351 - ECD_03540 0.79 -0.1
Or see this region's nucleotide sequence