Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03355 and ECD_03356 are separated by 41 nucleotides ECD_03356 and ECD_03357 are separated by 63 nucleotides ECD_03357 and ECD_03358 are separated by 115 nucleotides ECD_03358 and ECD_03359 are separated by 254 nucleotides
ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400
_03355
ECD_03356: ECD_03356 - putative Mg(2+) transport ATPase, inner membrane protein, at 3,516,442 to 3,517,089
_03356
ECD_03357: ECD_03357 - acid-resistance protein, at 3,517,153 to 3,517,479
_03357
ECD_03358: ECD_03358 - stress response protein acid-resistance protein, at 3,517,595 to 3,517,927
_03358
ECD_03359: ECD_03359 - acid-resistance membrane protein, at 3,518,182 to 3,518,754
_03359
Position (kb)
3517
3518 Strain fitness (log2 ratio)
-1
0
1 at 3516.369 kb on + strand at 3516.383 kb on - strand at 3516.447 kb on + strand at 3516.729 kb on - strand, within ECD_03356 at 3516.729 kb on - strand, within ECD_03356 at 3516.729 kb on - strand, within ECD_03356 at 3516.769 kb on + strand, within ECD_03356 at 3516.769 kb on + strand, within ECD_03356 at 3517.290 kb on - strand, within ECD_03357 at 3517.682 kb on - strand, within ECD_03358 at 3517.946 kb on - strand at 3518.007 kb on - strand at 3518.188 kb on + strand at 3518.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 3,516,369 + -1.0 3,516,383 - +0.3 3,516,447 + +0.5 3,516,729 - ECD_03356 0.44 +0.3 3,516,729 - ECD_03356 0.44 +1.3 3,516,729 - ECD_03356 0.44 -0.2 3,516,769 + ECD_03356 0.50 +0.6 3,516,769 + ECD_03356 0.50 +0.1 3,517,290 - ECD_03357 0.42 +0.2 3,517,682 - ECD_03358 0.26 +1.4 3,517,946 - -0.3 3,518,007 - +0.7 3,518,188 + +0.3 3,518,196 + -0.6
Or see this region's nucleotide sequence