Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02644 and ECD_02646 are separated by 256 nucleotides ECD_02646 and ECD_02647 overlap by 82 nucleotides ECD_02647 and ECD_02648 are separated by 627 nucleotides
ECD_02644: ECD_02644 - L-1,2-propanediol oxidoreductase, at 2,764,455 to 2,765,606
_02644
ECD_02646: ECD_02646 - IS1 protein InsB, at 2,765,863 to 2,766,366
_02646
ECD_02647: ECD_02647 - IS1 protein InsA, at 2,766,285 to 2,766,560
_02647
ECD_02648: ECD_02648 - L-fuculose phosphate aldolase, at 2,767,188 to 2,768,132
_02648
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-1
0
1
2 at 2764.864 kb on + strand, within ECD_02644 at 2764.864 kb on + strand, within ECD_02644 at 2764.865 kb on - strand, within ECD_02644 at 2764.865 kb on - strand, within ECD_02644 at 2764.898 kb on + strand, within ECD_02644 at 2764.949 kb on + strand, within ECD_02644 at 2764.950 kb on - strand, within ECD_02644 at 2764.989 kb on - strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.991 kb on + strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.992 kb on - strand, within ECD_02644 at 2764.993 kb on + strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2764.994 kb on - strand, within ECD_02644 at 2765.004 kb on - strand, within ECD_02644 at 2765.004 kb on - strand, within ECD_02644 at 2765.054 kb on + strand, within ECD_02644 at 2765.079 kb on - strand, within ECD_02644 at 2765.152 kb on + strand, within ECD_02644 at 2765.152 kb on + strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.153 kb on - strand, within ECD_02644 at 2765.157 kb on - strand, within ECD_02644 at 2765.208 kb on + strand, within ECD_02644 at 2765.294 kb on + strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.295 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.301 kb on - strand, within ECD_02644 at 2765.359 kb on - strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.384 kb on + strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.385 kb on - strand, within ECD_02644 at 2765.404 kb on - strand, within ECD_02644 at 2765.414 kb on - strand, within ECD_02644 at 2765.448 kb on - strand, within ECD_02644 at 2765.490 kb on - strand, within ECD_02644 at 2765.653 kb on + strand at 2765.654 kb on - strand at 2765.654 kb on - strand at 2765.676 kb on + strand at 2765.738 kb on - strand at 2765.824 kb on - strand at 2765.879 kb on - strand at 2766.674 kb on - strand at 2766.690 kb on - strand at 2766.690 kb on - strand at 2766.718 kb on + strand at 2766.718 kb on + strand at 2766.719 kb on - strand at 2766.719 kb on - strand at 2766.897 kb on - strand at 2766.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,764,864 + ECD_02644 0.36 -0.7 2,764,864 + ECD_02644 0.36 +0.2 2,764,865 - ECD_02644 0.36 +1.3 2,764,865 - ECD_02644 0.36 +0.4 2,764,898 + ECD_02644 0.38 +0.9 2,764,949 + ECD_02644 0.43 -0.4 2,764,950 - ECD_02644 0.43 +2.3 2,764,989 - ECD_02644 0.46 +0.8 2,764,991 + ECD_02644 0.47 +0.2 2,764,991 + ECD_02644 0.47 -0.1 2,764,991 + ECD_02644 0.47 +0.7 2,764,992 - ECD_02644 0.47 +1.7 2,764,992 - ECD_02644 0.47 +0.2 2,764,992 - ECD_02644 0.47 +0.2 2,764,992 - ECD_02644 0.47 +0.2 2,764,992 - ECD_02644 0.47 +0.8 2,764,992 - ECD_02644 0.47 +0.9 2,764,992 - ECD_02644 0.47 +0.3 2,764,992 - ECD_02644 0.47 -0.2 2,764,992 - ECD_02644 0.47 -0.3 2,764,993 + ECD_02644 0.47 -0.4 2,764,994 - ECD_02644 0.47 +0.5 2,764,994 - ECD_02644 0.47 +0.5 2,764,994 - ECD_02644 0.47 -0.2 2,764,994 - ECD_02644 0.47 -0.8 2,764,994 - ECD_02644 0.47 +0.1 2,764,994 - ECD_02644 0.47 -0.9 2,765,004 - ECD_02644 0.48 -0.1 2,765,004 - ECD_02644 0.48 +0.2 2,765,054 + ECD_02644 0.52 +0.0 2,765,079 - ECD_02644 0.54 +0.4 2,765,152 + ECD_02644 0.61 -0.2 2,765,152 + ECD_02644 0.61 -0.0 2,765,153 - ECD_02644 0.61 -0.1 2,765,153 - ECD_02644 0.61 +0.3 2,765,153 - ECD_02644 0.61 +1.2 2,765,157 - ECD_02644 0.61 +0.7 2,765,208 + ECD_02644 0.65 +0.9 2,765,294 + ECD_02644 0.73 +0.7 2,765,295 - ECD_02644 0.73 +0.2 2,765,295 - ECD_02644 0.73 +0.5 2,765,301 - ECD_02644 0.73 +1.8 2,765,301 - ECD_02644 0.73 -0.4 2,765,359 - ECD_02644 0.78 -0.5 2,765,384 + ECD_02644 0.81 -0.1 2,765,384 + ECD_02644 0.81 -0.2 2,765,384 + ECD_02644 0.81 -0.5 2,765,384 + ECD_02644 0.81 +0.3 2,765,385 - ECD_02644 0.81 -0.4 2,765,385 - ECD_02644 0.81 +0.6 2,765,385 - ECD_02644 0.81 -1.1 2,765,385 - ECD_02644 0.81 +0.2 2,765,385 - ECD_02644 0.81 +0.6 2,765,385 - ECD_02644 0.81 +0.2 2,765,404 - ECD_02644 0.82 -0.9 2,765,414 - ECD_02644 0.83 +0.4 2,765,448 - ECD_02644 0.86 +0.3 2,765,490 - ECD_02644 0.90 -0.1 2,765,653 + +0.4 2,765,654 - -0.2 2,765,654 - -0.1 2,765,676 + +0.4 2,765,738 - +0.4 2,765,824 - +0.2 2,765,879 - +0.4 2,766,674 - +0.6 2,766,690 - +0.2 2,766,690 - +0.5 2,766,718 + +0.1 2,766,718 + +0.2 2,766,719 - +0.0 2,766,719 - +0.4 2,766,897 - -0.2 2,766,897 - +0.1
Or see this region's nucleotide sequence