Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02429 and ECD_02430 are separated by 135 nucleotides ECD_02430 and ECD_02431 overlap by 4 nucleotides ECD_02431 and ECD_02432 overlap by 1 nucleotides ECD_02432 and ECD_02433 overlap by 4 nucleotides
ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701
_02429
ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198
_02430
ECD_02431: ECD_02431 - 3-phenylpropionate dioxygenase, small (beta) subunit, at 2,536,195 to 2,536,713
_02431
ECD_02432: ECD_02432 - 3-phenylpropionate dioxygenase, ferredoxin subunit, at 2,536,713 to 2,537,033
_02432
ECD_02433: ECD_02433 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, at 2,537,030 to 2,537,842
_02433
Position (kb)
2534
2535
2536
2537 Strain fitness (log2 ratio)
-1
0
1 at 2533.902 kb on - strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2534.029 kb on + strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.325 kb on - strand, within ECD_02429 at 2534.391 kb on - strand, within ECD_02429 at 2534.607 kb on - strand, within ECD_02429 at 2534.694 kb on - strand at 2534.694 kb on - strand at 2534.809 kb on + strand at 2534.809 kb on + strand at 2534.816 kb on + strand at 2534.837 kb on - strand at 2534.864 kb on + strand at 2534.906 kb on - strand at 2534.906 kb on - strand at 2534.927 kb on + strand at 2534.928 kb on - strand at 2534.967 kb on + strand at 2535.020 kb on + strand, within ECD_02430 at 2535.020 kb on + strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.279 kb on - strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.507 kb on + strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.635 kb on - strand, within ECD_02430 at 2535.721 kb on - strand, within ECD_02430 at 2535.755 kb on - strand, within ECD_02430 at 2535.760 kb on + strand, within ECD_02430 at 2535.884 kb on - strand, within ECD_02430 at 2536.072 kb on + strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.220 kb on + strand at 2536.220 kb on + strand at 2536.221 kb on - strand at 2536.488 kb on - strand, within ECD_02431 at 2536.553 kb on + strand, within ECD_02431 at 2536.592 kb on - strand, within ECD_02431 at 2536.659 kb on + strand, within ECD_02431 at 2536.703 kb on + strand at 2536.704 kb on - strand at 2536.725 kb on + strand at 2536.775 kb on + strand, within ECD_02432 at 2536.847 kb on + strand, within ECD_02432 at 2537.189 kb on - strand, within ECD_02433
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,533,902 - ECD_02429 0.10 -0.4 2,533,971 + ECD_02429 0.18 -0.2 2,533,971 + ECD_02429 0.18 -1.0 2,534,029 + ECD_02429 0.24 -0.2 2,534,181 - ECD_02429 0.42 -0.3 2,534,181 - ECD_02429 0.42 -0.5 2,534,325 - ECD_02429 0.58 +1.5 2,534,391 - ECD_02429 0.65 +0.4 2,534,607 - ECD_02429 0.89 -0.5 2,534,694 - +0.2 2,534,694 - +0.2 2,534,809 + -0.1 2,534,809 + -0.1 2,534,816 + -0.1 2,534,837 - +0.4 2,534,864 + +0.2 2,534,906 - -0.3 2,534,906 - -0.5 2,534,927 + -0.5 2,534,928 - -1.1 2,534,967 + +0.2 2,535,020 + ECD_02430 0.13 +0.3 2,535,020 + ECD_02430 0.13 +1.6 2,535,021 - ECD_02430 0.14 -0.4 2,535,021 - ECD_02430 0.14 +0.3 2,535,021 - ECD_02430 0.14 +0.2 2,535,145 + ECD_02430 0.23 +0.9 2,535,145 + ECD_02430 0.23 -0.3 2,535,278 + ECD_02430 0.32 +0.6 2,535,278 + ECD_02430 0.32 -0.2 2,535,278 + ECD_02430 0.32 +0.9 2,535,279 - ECD_02430 0.32 -0.1 2,535,280 + ECD_02430 0.33 -0.3 2,535,280 + ECD_02430 0.33 -0.1 2,535,281 - ECD_02430 0.33 -0.1 2,535,281 - ECD_02430 0.33 -0.4 2,535,281 - ECD_02430 0.33 -0.4 2,535,507 + ECD_02430 0.49 +0.3 2,535,508 - ECD_02430 0.49 +0.1 2,535,508 - ECD_02430 0.49 +1.6 2,535,635 - ECD_02430 0.59 +0.6 2,535,721 - ECD_02430 0.65 +0.8 2,535,755 - ECD_02430 0.67 +0.9 2,535,760 + ECD_02430 0.68 -0.2 2,535,884 - ECD_02430 0.77 -1.1 2,536,072 + +0.5 2,536,073 - +0.5 2,536,073 - -0.9 2,536,073 - -1.1 2,536,073 - -0.1 2,536,073 - +0.4 2,536,220 + +0.2 2,536,220 + +0.6 2,536,221 - -0.2 2,536,488 - ECD_02431 0.56 -0.0 2,536,553 + ECD_02431 0.69 +0.4 2,536,592 - ECD_02431 0.76 +0.3 2,536,659 + ECD_02431 0.89 -0.3 2,536,703 + -0.6 2,536,704 - +0.5 2,536,725 + -0.9 2,536,775 + ECD_02432 0.19 +1.3 2,536,847 + ECD_02432 0.42 -0.2 2,537,189 - ECD_02433 0.20 +0.3
Or see this region's nucleotide sequence