Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02274 and ECD_02275 are separated by 217 nucleotides ECD_02275 and ECD_02276 are separated by 17 nucleotides
ECD_02274: ECD_02274 - dsd operon activator; autorepressor, at 2,354,582 to 2,355,517
_02274
ECD_02275: ECD_02275 - D-serine transporter, at 2,355,735 to 2,357,072
_02275
ECD_02276: ECD_02276 - D-serine dehydratase, at 2,357,090 to 2,358,418
_02276
Position (kb)
2355
2356
2357
2358 Strain fitness (log2 ratio)
-1
0
1 at 2354.792 kb on - strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.866 kb on + strand, within ECD_02274 at 2354.924 kb on - strand, within ECD_02274 at 2354.974 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2354.988 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.055 kb on - strand, within ECD_02274 at 2355.152 kb on + strand, within ECD_02274 at 2355.273 kb on - strand, within ECD_02274 at 2355.381 kb on - strand, within ECD_02274 at 2355.734 kb on + strand at 2355.784 kb on + strand at 2356.153 kb on + strand, within ECD_02275 at 2356.178 kb on + strand, within ECD_02275 at 2356.228 kb on + strand, within ECD_02275 at 2356.230 kb on + strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.231 kb on - strand, within ECD_02275 at 2356.242 kb on - strand, within ECD_02275 at 2356.439 kb on - strand, within ECD_02275 at 2356.445 kb on - strand, within ECD_02275 at 2356.510 kb on - strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.575 kb on + strand, within ECD_02275 at 2356.586 kb on + strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.599 kb on - strand, within ECD_02275 at 2356.626 kb on - strand, within ECD_02275 at 2356.647 kb on - strand, within ECD_02275 at 2356.733 kb on + strand, within ECD_02275 at 2356.745 kb on + strand, within ECD_02275 at 2356.787 kb on + strand, within ECD_02275 at 2356.994 kb on + strand at 2356.994 kb on + strand at 2357.003 kb on + strand at 2357.004 kb on - strand at 2357.136 kb on + strand at 2357.205 kb on + strand at 2357.439 kb on + strand, within ECD_02276 at 2357.525 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.656 kb on + strand, within ECD_02276 at 2357.761 kb on + strand, within ECD_02276 at 2357.794 kb on + strand, within ECD_02276 at 2358.022 kb on + strand, within ECD_02276 at 2358.022 kb on + strand, within ECD_02276 at 2358.023 kb on - strand, within ECD_02276 at 2358.030 kb on + strand, within ECD_02276 at 2358.040 kb on + strand, within ECD_02276 at 2358.041 kb on - strand, within ECD_02276 at 2358.048 kb on + strand, within ECD_02276
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,354,792 - ECD_02274 0.22 -0.2 2,354,866 + ECD_02274 0.30 +0.2 2,354,866 + ECD_02274 0.30 -0.6 2,354,924 - ECD_02274 0.37 -0.1 2,354,974 - ECD_02274 0.42 -0.3 2,354,988 - ECD_02274 0.43 +0.9 2,354,988 - ECD_02274 0.43 -0.0 2,354,988 - ECD_02274 0.43 +0.6 2,354,988 - ECD_02274 0.43 -0.3 2,355,055 - ECD_02274 0.51 +0.4 2,355,055 - ECD_02274 0.51 +0.7 2,355,055 - ECD_02274 0.51 +0.4 2,355,055 - ECD_02274 0.51 +0.9 2,355,152 + ECD_02274 0.61 +0.5 2,355,273 - ECD_02274 0.74 +1.2 2,355,381 - ECD_02274 0.85 +0.5 2,355,734 + +0.0 2,355,784 + -0.3 2,356,153 + ECD_02275 0.31 +0.9 2,356,178 + ECD_02275 0.33 +0.4 2,356,228 + ECD_02275 0.37 +0.1 2,356,230 + ECD_02275 0.37 +0.3 2,356,231 - ECD_02275 0.37 +0.8 2,356,231 - ECD_02275 0.37 +0.1 2,356,242 - ECD_02275 0.38 +0.3 2,356,439 - ECD_02275 0.53 +0.8 2,356,445 - ECD_02275 0.53 +0.3 2,356,510 - ECD_02275 0.58 -0.5 2,356,575 + ECD_02275 0.63 -0.3 2,356,575 + ECD_02275 0.63 +1.0 2,356,575 + ECD_02275 0.63 +0.4 2,356,586 + ECD_02275 0.64 -1.0 2,356,599 - ECD_02275 0.65 +0.8 2,356,599 - ECD_02275 0.65 -0.2 2,356,599 - ECD_02275 0.65 -0.3 2,356,626 - ECD_02275 0.67 +0.9 2,356,647 - ECD_02275 0.68 -1.4 2,356,733 + ECD_02275 0.75 +0.7 2,356,745 + ECD_02275 0.75 +0.8 2,356,787 + ECD_02275 0.79 -0.0 2,356,994 + -0.9 2,356,994 + +0.7 2,357,003 + +0.2 2,357,004 - +0.1 2,357,136 + +0.4 2,357,205 + +0.1 2,357,439 + ECD_02276 0.26 -0.2 2,357,525 + ECD_02276 0.33 +0.7 2,357,656 + ECD_02276 0.43 +0.4 2,357,656 + ECD_02276 0.43 -0.6 2,357,656 + ECD_02276 0.43 +0.0 2,357,761 + ECD_02276 0.50 -0.1 2,357,794 + ECD_02276 0.53 +0.4 2,358,022 + ECD_02276 0.70 +0.2 2,358,022 + ECD_02276 0.70 +0.5 2,358,023 - ECD_02276 0.70 -1.3 2,358,030 + ECD_02276 0.71 +0.0 2,358,040 + ECD_02276 0.71 +0.7 2,358,041 - ECD_02276 0.72 +0.7 2,358,048 + ECD_02276 0.72 +0.2
Or see this region's nucleotide sequence