Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02252 and ECD_02253 overlap by 1 nucleotides ECD_02253 and ECD_02254 are separated by 3 nucleotides ECD_02254 and ECD_02255 are separated by 34 nucleotides
ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813
_02252
ECD_02253: ECD_02253 - murein DD-endopeptidase, at 2,332,813 to 2,333,637
_02253
ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726
_02254
ECD_02255: ECD_02255 - N5-glutamine methyltransferase, at 2,334,761 to 2,335,693
_02255
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-2
-1
0
1 at 2332.789 kb on + strand at 2332.801 kb on + strand at 2332.814 kb on + strand at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2333.002 kb on + strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.435 kb on + strand, within ECD_02253 at 2333.466 kb on - strand, within ECD_02253 at 2333.506 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.818 kb on - strand, within ECD_02254 at 2334.401 kb on + strand, within ECD_02254 at 2334.402 kb on - strand, within ECD_02254 at 2334.433 kb on - strand, within ECD_02254 at 2334.821 kb on - strand at 2334.887 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2335.027 kb on - strand, within ECD_02255 at 2335.049 kb on - strand, within ECD_02255 at 2335.279 kb on + strand, within ECD_02255 at 2335.419 kb on + strand, within ECD_02255 at 2335.420 kb on - strand, within ECD_02255 at 2335.557 kb on - strand, within ECD_02255 at 2335.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,332,789 + +1.1 2,332,801 + +0.0 2,332,814 + -0.6 2,332,997 - ECD_02253 0.22 -0.2 2,332,997 - ECD_02253 0.22 +0.0 2,332,997 - ECD_02253 0.22 -0.4 2,333,002 + ECD_02253 0.23 +0.1 2,333,003 - ECD_02253 0.23 -0.3 2,333,003 - ECD_02253 0.23 -0.1 2,333,435 + ECD_02253 0.75 -0.2 2,333,466 - ECD_02253 0.79 -0.5 2,333,506 - ECD_02253 0.84 +0.3 2,333,515 - ECD_02253 0.85 +0.5 2,333,515 - ECD_02253 0.85 -0.0 2,333,818 - ECD_02254 0.16 -1.9 2,334,401 + ECD_02254 0.70 -0.5 2,334,402 - ECD_02254 0.70 -0.9 2,334,433 - ECD_02254 0.73 -0.9 2,334,821 - +0.6 2,334,887 - ECD_02255 0.14 -0.5 2,334,894 - ECD_02255 0.14 -0.1 2,334,894 - ECD_02255 0.14 -0.2 2,335,027 - ECD_02255 0.29 +0.7 2,335,049 - ECD_02255 0.31 -0.7 2,335,279 + ECD_02255 0.56 +0.7 2,335,419 + ECD_02255 0.71 +1.1 2,335,420 - ECD_02255 0.71 +1.5 2,335,557 - ECD_02255 0.85 -0.0 2,335,665 - -0.2
Or see this region's nucleotide sequence