Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02146 and ECD_02147 overlap by 4 nucleotides ECD_02147 and ECD_02148 are separated by 195 nucleotides ECD_02148 and ECD_02149 overlap by 1 nucleotides
ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230
_02146
ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612
_02147
ECD_02148: ECD_02148 - acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, at 2,213,808 to 2,214,470
_02148
ECD_02149: ECD_02149 - acetyl-CoA:acetoacetyl-CoA transferase, beta subunit, at 2,214,470 to 2,215,120
_02149
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-1
0
1 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.342 kb on + strand, within ECD_02146 at 2211.602 kb on + strand, within ECD_02146 at 2211.607 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.852 kb on - strand, within ECD_02146 at 2211.914 kb on + strand, within ECD_02146 at 2211.985 kb on + strand, within ECD_02146 at 2212.227 kb on - strand at 2212.236 kb on - strand at 2212.348 kb on + strand at 2212.479 kb on + strand, within ECD_02147 at 2212.480 kb on - strand, within ECD_02147 at 2212.531 kb on - strand, within ECD_02147 at 2212.536 kb on - strand, within ECD_02147 at 2212.996 kb on + strand, within ECD_02147 at 2213.104 kb on + strand, within ECD_02147 at 2213.158 kb on + strand, within ECD_02147 at 2213.193 kb on - strand, within ECD_02147 at 2213.572 kb on - strand at 2213.608 kb on + strand at 2213.609 kb on - strand at 2213.763 kb on - strand at 2213.830 kb on + strand at 2213.830 kb on + strand at 2213.886 kb on - strand, within ECD_02148 at 2214.074 kb on - strand, within ECD_02148 at 2214.111 kb on - strand, within ECD_02148 at 2214.307 kb on - strand, within ECD_02148 at 2214.356 kb on + strand, within ECD_02148 at 2214.589 kb on + strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 2,211,255 - ECD_02146 0.47 +0.5 2,211,255 - ECD_02146 0.47 +0.4 2,211,255 - ECD_02146 0.47 +0.3 2,211,342 + ECD_02146 0.51 -1.2 2,211,602 + ECD_02146 0.66 +0.2 2,211,607 - ECD_02146 0.66 -0.0 2,211,669 - ECD_02146 0.69 +0.2 2,211,669 - ECD_02146 0.69 -0.2 2,211,852 - ECD_02146 0.79 -0.0 2,211,914 + ECD_02146 0.83 +0.1 2,211,985 + ECD_02146 0.87 -0.2 2,212,227 - +0.4 2,212,236 - -0.7 2,212,348 + -1.0 2,212,479 + ECD_02147 0.18 +1.6 2,212,480 - ECD_02147 0.18 +0.2 2,212,531 - ECD_02147 0.22 +0.6 2,212,536 - ECD_02147 0.22 -0.7 2,212,996 + ECD_02147 0.55 -0.8 2,213,104 + ECD_02147 0.63 -0.3 2,213,158 + ECD_02147 0.67 +0.1 2,213,193 - ECD_02147 0.70 -0.8 2,213,572 - +0.5 2,213,608 + -0.4 2,213,609 - +1.2 2,213,763 - -0.9 2,213,830 + -0.8 2,213,830 + -0.9 2,213,886 - ECD_02148 0.12 -0.2 2,214,074 - ECD_02148 0.40 +0.6 2,214,111 - ECD_02148 0.46 +0.2 2,214,307 - ECD_02148 0.75 +1.0 2,214,356 + ECD_02148 0.83 -1.2 2,214,589 + ECD_02149 0.18 -0.2 2,214,590 - ECD_02149 0.18 -0.0 2,214,590 - ECD_02149 0.18 +0.6
Or see this region's nucleotide sequence