Strain Fitness in Escherichia coli BL21 around ECD_02137

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02136 and ECD_02137 are separated by 829 nucleotidesECD_02137 and ECD_02138 are separated by 217 nucleotides ECD_02136: ECD_02136 - ecotin, a serine protease inhibitor, at 2,197,555 to 2,198,043 _02136 ECD_02137: ECD_02137 - malate dehydrogenase, FAD/NAD(P)-binding domain, at 2,198,873 to 2,200,519 _02137 ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380 _02138 Position (kb) 2198 2199 2200 2201Strain fitness (log2 ratio) -1 0 1at 2197.982 kb on + strand, within ECD_02136at 2197.982 kb on + strand, within ECD_02136at 2197.982 kb on + strand, within ECD_02136at 2198.041 kb on + strandat 2198.312 kb on + strandat 2198.850 kb on - strandat 2198.875 kb on - strandat 2198.875 kb on - strandat 2198.875 kb on - strandat 2199.065 kb on - strand, within ECD_02137at 2199.065 kb on - strand, within ECD_02137at 2199.065 kb on - strand, within ECD_02137at 2199.124 kb on + strand, within ECD_02137at 2199.309 kb on + strand, within ECD_02137at 2199.310 kb on - strand, within ECD_02137at 2199.578 kb on - strand, within ECD_02137at 2199.806 kb on - strand, within ECD_02137at 2199.851 kb on - strand, within ECD_02137at 2199.876 kb on - strand, within ECD_02137at 2200.099 kb on + strand, within ECD_02137at 2200.100 kb on - strand, within ECD_02137at 2200.100 kb on - strand, within ECD_02137at 2200.112 kb on - strand, within ECD_02137at 2200.118 kb on - strand, within ECD_02137at 2200.133 kb on - strand, within ECD_02137at 2200.374 kb on + strandat 2200.375 kb on - strandat 2200.419 kb on - strandat 2200.474 kb on + strandat 2200.474 kb on + strandat 2200.475 kb on - strandat 2200.732 kb on + strandat 2200.735 kb on + strandat 2200.739 kb on - strandat 2200.739 kb on - strandat 2200.875 kb on - strandat 2201.072 kb on + strand, within ECD_02138at 2201.073 kb on - strand, within ECD_02138at 2201.263 kb on + strand, within ECD_02138at 2201.264 kb on - strand, within ECD_02138

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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2,197,982 + ECD_02136 0.87 -0.0
2,197,982 + ECD_02136 0.87 +0.2
2,197,982 + ECD_02136 0.87 +0.0
2,198,041 + +0.6
2,198,312 + -0.1
2,198,850 - -0.4
2,198,875 - +0.1
2,198,875 - +0.7
2,198,875 - -1.4
2,199,065 - ECD_02137 0.12 +0.2
2,199,065 - ECD_02137 0.12 -0.4
2,199,065 - ECD_02137 0.12 -0.7
2,199,124 + ECD_02137 0.15 -0.5
2,199,309 + ECD_02137 0.26 +1.0
2,199,310 - ECD_02137 0.27 -0.3
2,199,578 - ECD_02137 0.43 +1.4
2,199,806 - ECD_02137 0.57 -1.4
2,199,851 - ECD_02137 0.59 -0.6
2,199,876 - ECD_02137 0.61 -0.4
2,200,099 + ECD_02137 0.74 +0.1
2,200,100 - ECD_02137 0.74 -0.7
2,200,100 - ECD_02137 0.74 +1.5
2,200,112 - ECD_02137 0.75 +0.9
2,200,118 - ECD_02137 0.76 +0.3
2,200,133 - ECD_02137 0.77 +1.5
2,200,374 + +0.2
2,200,375 - +0.3
2,200,419 - +0.4
2,200,474 + +0.9
2,200,474 + -0.6
2,200,475 - -0.3
2,200,732 + +0.6
2,200,735 + +0.6
2,200,739 - +0.8
2,200,739 - +0.3
2,200,875 - -0.6
2,201,072 + ECD_02138 0.20 +0.4
2,201,073 - ECD_02138 0.20 +0.6
2,201,263 + ECD_02138 0.32 -0.0
2,201,264 - ECD_02138 0.32 +0.2

Or see this region's nucleotide sequence