Strain Fitness in Escherichia coli BL21 around ECD_01977

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01976 and ECD_01977 overlap by 4 nucleotidesECD_01977 and ECD_01978 overlap by 4 nucleotides ECD_01976: ECD_01976 - protein kinase-related putative non-specific DNA-binding protein, at 2,048,038 to 2,049,978 _01976 ECD_01977: ECD_01977 - ser/thr phosphatase-related protein, at 2,049,975 to 2,050,736 _01977 ECD_01978: ECD_01978 - VMA domain protein, at 2,050,733 to 2,051,392 _01978 Position (kb) 2049 2050 2051Strain fitness (log2 ratio) -1 0 1at 2049.058 kb on - strand, within ECD_01976at 2049.131 kb on - strand, within ECD_01976at 2049.217 kb on + strand, within ECD_01976at 2049.218 kb on - strand, within ECD_01976at 2049.235 kb on - strand, within ECD_01976at 2049.460 kb on + strand, within ECD_01976at 2049.538 kb on - strand, within ECD_01976at 2049.621 kb on - strand, within ECD_01976at 2049.677 kb on + strand, within ECD_01976at 2049.678 kb on - strand, within ECD_01976at 2049.963 kb on - strandat 2049.963 kb on - strandat 2049.963 kb on - strandat 2050.068 kb on + strand, within ECD_01977at 2050.475 kb on + strand, within ECD_01977at 2050.497 kb on - strand, within ECD_01977at 2050.677 kb on + strandat 2050.678 kb on - strandat 2050.844 kb on + strand, within ECD_01978at 2051.350 kb on + strandat 2051.546 kb on + strandat 2051.614 kb on + strandat 2051.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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2,049,058 - ECD_01976 0.53 +0.1
2,049,131 - ECD_01976 0.56 -0.7
2,049,217 + ECD_01976 0.61 -0.1
2,049,218 - ECD_01976 0.61 +0.9
2,049,235 - ECD_01976 0.62 +0.3
2,049,460 + ECD_01976 0.73 +0.6
2,049,538 - ECD_01976 0.77 +0.5
2,049,621 - ECD_01976 0.82 -0.3
2,049,677 + ECD_01976 0.84 -0.1
2,049,678 - ECD_01976 0.84 +0.6
2,049,963 - +0.9
2,049,963 - +0.9
2,049,963 - +0.3
2,050,068 + ECD_01977 0.12 +0.1
2,050,475 + ECD_01977 0.66 +0.6
2,050,497 - ECD_01977 0.69 -0.0
2,050,677 + +0.2
2,050,678 - +0.6
2,050,844 + ECD_01978 0.17 +0.8
2,051,350 + +0.1
2,051,546 + -0.1
2,051,614 + +0.1
2,051,637 + +0.0

Or see this region's nucleotide sequence