Strain Fitness in Escherichia coli BL21 around ECD_01864

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01863 and ECD_01864 are separated by 779 nucleotidesECD_01864 and ECD_01865 are separated by 6 nucleotides ECD_01863: ECD_01863 - flagellar class II regulon transcriptional activator, with FlhC, at 1,923,765 to 1,924,115 _01863 ECD_01864: ECD_01864 - universal stress protein, at 1,924,895 to 1,925,323 _01864 ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754 _01865 Position (kb) 1924 1925 1926Strain fitness (log2 ratio) -1 0 1at 1924.063 kb on - strand, within ECD_01863at 1925.173 kb on + strand, within ECD_01864at 1925.184 kb on + strand, within ECD_01864at 1925.184 kb on + strand, within ECD_01864at 1925.500 kb on + strand, within ECD_01865at 1925.771 kb on + strand, within ECD_01865at 1925.785 kb on + strand, within ECD_01865at 1925.786 kb on - strand, within ECD_01865

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,924,063 - ECD_01863 0.85 +0.2
1,925,173 + ECD_01864 0.65 -0.4
1,925,184 + ECD_01864 0.67 -0.2
1,925,184 + ECD_01864 0.67 -1.0
1,925,500 + ECD_01865 0.12 -0.4
1,925,771 + ECD_01865 0.31 -0.1
1,925,785 + ECD_01865 0.32 -0.1
1,925,786 - ECD_01865 0.32 -0.4

Or see this region's nucleotide sequence