Strain Fitness in Escherichia coli BL21 around ECD_01830

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01828 and ECD_01829 are separated by 78 nucleotidesECD_01829 and ECD_01830 overlap by 4 nucleotidesECD_01830 and ECD_01831 are separated by 340 nucleotides ECD_01828: ECD_01828 - zinc ABC transporter periplasmic binding protein, at 1,887,375 to 1,888,307 _01828 ECD_01829: ECD_01829 - zinc ABC transporter ATPase, at 1,888,386 to 1,889,141 _01829 ECD_01830: ECD_01830 - zinc ABC transporter permease, at 1,889,138 to 1,889,923 _01830 ECD_01831: ECD_01831 - ATP-dependent DNA helicase, component of RuvABC resolvasome, at 1,890,264 to 1,891,274 _01831 Position (kb) 1889 1890Strain fitness (log2 ratio) -1 0 1at 1888.325 kb on + strandat 1888.489 kb on + strand, within ECD_01829at 1888.511 kb on + strand, within ECD_01829at 1888.600 kb on + strand, within ECD_01829at 1888.862 kb on - strand, within ECD_01829at 1888.863 kb on + strand, within ECD_01829at 1888.863 kb on + strand, within ECD_01829at 1888.864 kb on - strand, within ECD_01829at 1889.214 kb on + strandat 1889.265 kb on + strand, within ECD_01830at 1889.309 kb on + strand, within ECD_01830at 1889.455 kb on + strand, within ECD_01830at 1889.713 kb on + strand, within ECD_01830at 1889.890 kb on + strandat 1890.002 kb on + strandat 1890.071 kb on + strandat 1890.126 kb on - strandat 1890.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,888,325 + -0.2
1,888,489 + ECD_01829 0.14 +0.3
1,888,511 + ECD_01829 0.17 -0.6
1,888,600 + ECD_01829 0.28 +1.2
1,888,862 - ECD_01829 0.63 +0.3
1,888,863 + ECD_01829 0.63 -0.3
1,888,863 + ECD_01829 0.63 +0.5
1,888,864 - ECD_01829 0.63 -1.2
1,889,214 + +0.5
1,889,265 + ECD_01830 0.16 -0.3
1,889,309 + ECD_01830 0.22 -0.9
1,889,455 + ECD_01830 0.40 -1.6
1,889,713 + ECD_01830 0.73 -0.5
1,889,890 + -0.2
1,890,002 + -0.4
1,890,071 + +0.4
1,890,126 - +0.2
1,890,169 - +0.3

Or see this region's nucleotide sequence