Strain Fitness in Escherichia coli BL21 around ECD_01815

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01813 and ECD_01814 are separated by 101 nucleotidesECD_01814 and ECD_01815 are separated by 23 nucleotidesECD_01815 and ECD_01816 overlap by 4 nucleotides ECD_01813: ECD_01813 - DNA polymerase III, theta subunit, at 1,870,832 to 1,871,062 _01813 ECD_01814: ECD_01814 - C-N hydrolase family protein, at 1,871,164 to 1,871,820 _01814 ECD_01815: ECD_01815 - exodeoxyribonuclease 10; DNA exonuclease X, at 1,871,844 to 1,872,506 _01815 ECD_01816: ECD_01816 - protease II, at 1,872,503 to 1,874,563 _01816 Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -1 0 1at 1871.428 kb on - strand, within ECD_01814at 1871.428 kb on - strand, within ECD_01814at 1871.700 kb on + strand, within ECD_01814at 1871.969 kb on + strand, within ECD_01815at 1871.969 kb on + strand, within ECD_01815at 1871.972 kb on + strand, within ECD_01815at 1872.054 kb on + strand, within ECD_01815at 1872.072 kb on + strand, within ECD_01815at 1872.072 kb on + strand, within ECD_01815at 1872.073 kb on - strand, within ECD_01815at 1872.255 kb on + strand, within ECD_01815at 1872.266 kb on + strand, within ECD_01815at 1872.266 kb on + strand, within ECD_01815at 1872.293 kb on + strand, within ECD_01815at 1872.294 kb on - strand, within ECD_01815at 1872.732 kb on - strand, within ECD_01816at 1872.772 kb on - strand, within ECD_01816at 1873.190 kb on - strand, within ECD_01816at 1873.216 kb on - strand, within ECD_01816at 1873.486 kb on - strand, within ECD_01816at 1873.486 kb on - strand, within ECD_01816

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,871,428 - ECD_01814 0.40 -0.5
1,871,428 - ECD_01814 0.40 +0.3
1,871,700 + ECD_01814 0.82 -0.7
1,871,969 + ECD_01815 0.19 -0.3
1,871,969 + ECD_01815 0.19 +1.0
1,871,972 + ECD_01815 0.19 +0.8
1,872,054 + ECD_01815 0.32 +0.7
1,872,072 + ECD_01815 0.34 -0.1
1,872,072 + ECD_01815 0.34 +1.0
1,872,073 - ECD_01815 0.35 +0.1
1,872,255 + ECD_01815 0.62 +0.3
1,872,266 + ECD_01815 0.64 +0.4
1,872,266 + ECD_01815 0.64 +0.5
1,872,293 + ECD_01815 0.68 +1.0
1,872,294 - ECD_01815 0.68 +0.1
1,872,732 - ECD_01816 0.11 +0.2
1,872,772 - ECD_01816 0.13 +1.2
1,873,190 - ECD_01816 0.33 +0.7
1,873,216 - ECD_01816 0.35 +0.5
1,873,486 - ECD_01816 0.48 -0.0
1,873,486 - ECD_01816 0.48 -0.7

Or see this region's nucleotide sequence