Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01809 and ECD_01810 are separated by 394 nucleotides ECD_01810 and ECD_01811 are separated by 12 nucleotides ECD_01811 and ECD_01812 are separated by 3 nucleotides ECD_01812 and ECD_01813 are separated by 138 nucleotides ECD_01813 and ECD_01814 are separated by 101 nucleotides
ECD_01809: ECD_01809 - serine/threonine-specific protein phosphatase 1, at 1,868,038 to 1,868,694
_01809
ECD_01810: ECD_01810 - DUF2511 family protein, at 1,869,089 to 1,869,430
_01810
ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315
_01811
ECD_01812: ECD_01812 - CopC family protein, at 1,870,319 to 1,870,693
_01812
ECD_01813: ECD_01813 - DNA polymerase III, theta subunit, at 1,870,832 to 1,871,062
_01813
ECD_01814: ECD_01814 - C-N hydrolase family protein, at 1,871,164 to 1,871,820
_01814
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-1
0
1 at 1868.788 kb on + strand at 1868.788 kb on + strand at 1868.821 kb on + strand at 1868.942 kb on + strand at 1869.267 kb on + strand, within ECD_01810 at 1869.268 kb on - strand, within ECD_01810 at 1869.399 kb on - strand at 1869.498 kb on - strand at 1869.580 kb on - strand, within ECD_01811 at 1869.605 kb on + strand, within ECD_01811 at 1869.608 kb on - strand, within ECD_01811 at 1869.803 kb on - strand, within ECD_01811 at 1869.869 kb on - strand, within ECD_01811 at 1869.956 kb on - strand, within ECD_01811 at 1870.089 kb on - strand, within ECD_01811 at 1870.089 kb on - strand, within ECD_01811 at 1870.320 kb on + strand at 1870.393 kb on - strand, within ECD_01812 at 1870.545 kb on - strand, within ECD_01812 at 1870.694 kb on - strand at 1870.697 kb on - strand at 1870.697 kb on - strand at 1870.734 kb on - strand at 1870.744 kb on - strand at 1870.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,868,788 + +0.4 1,868,788 + +0.5 1,868,821 + +0.4 1,868,942 + -0.5 1,869,267 + ECD_01810 0.52 +0.9 1,869,268 - ECD_01810 0.52 -0.0 1,869,399 - -0.1 1,869,498 - +0.2 1,869,580 - ECD_01811 0.16 +0.7 1,869,605 + ECD_01811 0.19 -0.4 1,869,608 - ECD_01811 0.19 +0.2 1,869,803 - ECD_01811 0.41 +0.7 1,869,869 - ECD_01811 0.49 +0.3 1,869,956 - ECD_01811 0.59 -0.3 1,870,089 - ECD_01811 0.74 +0.4 1,870,089 - ECD_01811 0.74 +0.9 1,870,320 + +0.3 1,870,393 - ECD_01812 0.20 -0.2 1,870,545 - ECD_01812 0.60 +0.7 1,870,694 - +0.0 1,870,697 - -0.3 1,870,697 - -0.5 1,870,734 - +0.9 1,870,744 - +0.5 1,870,796 - -0.6
Or see this region's nucleotide sequence