Strain Fitness in Escherichia coli BL21 around ECD_01746

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01745 and ECD_01746 are separated by 369 nucleotidesECD_01746 and ECD_01747 are separated by 41 nucleotidesECD_01747 and ECD_01748 are separated by 341 nucleotides ECD_01745: ECD_01745 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,804,633 to 1,805,709 _01745 ECD_01746: ECD_01746 - DUF1315 family protein, at 1,806,079 to 1,806,351 _01746 ECD_01747: ECD_01747 - methionine sulfoxide reductase B, at 1,806,393 to 1,806,806 _01747 ECD_01748: ECD_01748 - glyceraldehyde-3-phosphate dehydrogenase A, at 1,807,148 to 1,808,143 _01748 Position (kb) 1806 1807Strain fitness (log2 ratio) -2 -1 0 1at 1806.085 kb on - strandat 1806.112 kb on - strand, within ECD_01746at 1806.309 kb on - strand, within ECD_01746at 1806.311 kb on - strand, within ECD_01746at 1806.373 kb on + strandat 1806.450 kb on - strand, within ECD_01747at 1806.679 kb on - strand, within ECD_01747at 1806.679 kb on - strand, within ECD_01747at 1806.840 kb on - strandat 1807.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,806,085 - -0.4
1,806,112 - ECD_01746 0.12 -2.5
1,806,309 - ECD_01746 0.84 -0.3
1,806,311 - ECD_01746 0.85 +0.2
1,806,373 + +0.3
1,806,450 - ECD_01747 0.14 +0.0
1,806,679 - ECD_01747 0.69 +0.6
1,806,679 - ECD_01747 0.69 -0.5
1,806,840 - +0.1
1,807,119 + -0.5

Or see this region's nucleotide sequence