Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01257 and ECD_01258 are separated by 192 nucleotides ECD_01258 and ECD_01259 overlap by 1 nucleotides ECD_01259 and ECD_01260 are separated by 125 nucleotides ECD_01260 and ECD_01261 are separated by 268 nucleotides
ECD_01257: ECD_01257 - LPS regulatory protein; putative modulator of LpxC proteolysis, at 1,326,928 to 1,328,097
_01257
ECD_01258: ECD_01258 - orotidine-5'-phosphate decarboxylase, at 1,328,290 to 1,329,027
_01258
ECD_01259: ECD_01259 - initiation factor function partial mimic, SUI1 family, at 1,329,027 to 1,329,353
_01259
ECD_01260: ECD_01260 - osmotically and stress inducible lipoprotein, at 1,329,479 to 1,329,697
_01260
ECD_01261: ECD_01261 - global regulator of transcription; DeoR family, at 1,329,966 to 1,330,715
_01261
Position (kb) 1329
1330 Strain fitness (log2 ratio) -1
0
1 at 1328.361 kb on + strand at 1328.439 kb on + strand, within ECD_01258 at 1328.439 kb on + strand, within ECD_01258 at 1328.940 kb on + strand, within ECD_01258 at 1330.082 kb on - strand, within ECD_01261 at 1330.167 kb on - strand, within ECD_01261 at 1330.281 kb on - strand, within ECD_01261
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,328,361 + -0.4 1,328,439 + ECD_01258 0.20 -0.4 1,328,439 + ECD_01258 0.20 -1.2 1,328,940 + ECD_01258 0.88 -1.0 1,330,082 - ECD_01261 0.15 +0.3 1,330,167 - ECD_01261 0.27 -1.6 1,330,281 - ECD_01261 0.42 +1.0
Or see this region's nucleotide sequence