Strain Fitness in Escherichia coli BL21 around ECD_01118

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01117 and ECD_01118 are separated by 524 nucleotidesECD_01118 and ECD_01119 are separated by 118 nucleotidesECD_01119 and ECD_01120 are separated by 49 nucleotides ECD_01116: ECD_01116 - IS1 protein InsA, at 1,181,668 to 1,181,943 _01116 ECD_01117: ECD_01117 - IS1 protein InsB, at 1,181,862 to 1,182,365 _01117 ECD_01118: ECD_01118 - deacetylase of acs and cheY, chemotaxis regulator, at 1,182,890 to 1,183,729 _01118 ECD_01119: ECD_01119 - inner membrane protein, at 1,183,848 to 1,184,636 _01119 ECD_01120: ECD_01120 - DUF3592 family inner membrane protein, at 1,184,686 to 1,185,093 _01120 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -1 0 1at 1182.410 kb on + strandat 1182.564 kb on - strandat 1182.858 kb on + strandat 1183.017 kb on + strand, within ECD_01118at 1183.310 kb on - strand, within ECD_01118at 1183.405 kb on + strand, within ECD_01118at 1183.490 kb on + strand, within ECD_01118at 1183.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,182,410 + -0.1
1,182,564 - +0.4
1,182,858 + -1.0
1,183,017 + ECD_01118 0.15 +1.0
1,183,310 - ECD_01118 0.50 +0.8
1,183,405 + ECD_01118 0.61 +0.3
1,183,490 + ECD_01118 0.71 +1.6
1,183,857 - -0.1

Or see this region's nucleotide sequence