Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01099 and ECD_01100 are separated by 2 nucleotides ECD_01100 and ECD_01101 are separated by 13 nucleotides ECD_01101 and ECD_01102 overlap by 20 nucleotides ECD_01102 and ECD_01103 are separated by 10 nucleotides
ECD_01099: ECD_01099 - purine nucleoside phosphoramidase, dadA activator protein, at 1,164,452 to 1,164,811
_01099
ECD_01100: ECD_01100 - uncharacterized protein, at 1,164,814 to 1,165,191
_01100
ECD_01101: ECD_01101 - OM lipoprotein stimulator of MrcB transpeptidase, at 1,165,205 to 1,165,846
_01101
ECD_01102: ECD_01102 - thiamine kinase, at 1,165,827 to 1,166,651
_01102
ECD_01103: ECD_01103 - beta N-acetyl-glucosaminidase, at 1,166,662 to 1,167,687
_01103
Position (kb)
1165
1166 Strain fitness (log2 ratio)
-1
0
1 at 1164.382 kb on + strand at 1164.387 kb on + strand at 1164.466 kb on + strand at 1164.568 kb on + strand, within ECD_01099 at 1165.177 kb on + strand at 1165.182 kb on - strand at 1165.183 kb on + strand at 1165.698 kb on + strand, within ECD_01101 at 1165.734 kb on + strand, within ECD_01101 at 1165.734 kb on + strand, within ECD_01101 at 1165.913 kb on + strand, within ECD_01102 at 1166.069 kb on - strand, within ECD_01102 at 1166.160 kb on + strand, within ECD_01102 at 1166.164 kb on + strand, within ECD_01102 at 1166.272 kb on + strand, within ECD_01102 at 1166.314 kb on + strand, within ECD_01102 at 1166.327 kb on + strand, within ECD_01102 at 1166.475 kb on + strand, within ECD_01102 at 1166.509 kb on + strand, within ECD_01102 at 1166.635 kb on + strand at 1166.638 kb on + strand at 1166.767 kb on + strand, within ECD_01103
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 1,164,382 + +0.4 1,164,387 + -0.3 1,164,466 + -0.9 1,164,568 + ECD_01099 0.32 +0.5 1,165,177 + -0.3 1,165,182 - +0.7 1,165,183 + +0.2 1,165,698 + ECD_01101 0.77 +0.3 1,165,734 + ECD_01101 0.82 -0.4 1,165,734 + ECD_01101 0.82 +0.1 1,165,913 + ECD_01102 0.10 -0.9 1,166,069 - ECD_01102 0.29 -0.3 1,166,160 + ECD_01102 0.40 +0.5 1,166,164 + ECD_01102 0.41 +0.7 1,166,272 + ECD_01102 0.54 +0.7 1,166,314 + ECD_01102 0.59 -0.1 1,166,327 + ECD_01102 0.61 -1.2 1,166,475 + ECD_01102 0.79 -0.4 1,166,509 + ECD_01102 0.83 +0.3 1,166,635 + -0.1 1,166,638 + -0.1 1,166,767 + ECD_01103 0.10 +0.1
Or see this region's nucleotide sequence