Strain Fitness in Escherichia coli BL21 around ECD_01025

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01024 and ECD_01025 overlap by 8 nucleotidesECD_01025 and ECD_01026 are separated by 8 nucleotides ECD_01024: ECD_01024 - biofilm PGA synthase PgaCD, catalytic subunit; poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 1,090,804 to 1,092,129 _01024 ECD_01025: ECD_01025 - poly-beta-1,6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein, at 1,092,122 to 1,094,140 _01025 ECD_01026: ECD_01026 - biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 1,094,149 to 1,096,572 _01026 Position (kb) 1092 1093 1094 1095Strain fitness (log2 ratio) -1 0 1at 1093.942 kb on + strandat 1093.943 kb on - strandat 1094.099 kb on - strandat 1094.181 kb on - strandat 1094.182 kb on + strandat 1094.182 kb on + strandat 1094.207 kb on + strandat 1094.208 kb on - strandat 1094.228 kb on - strandat 1094.263 kb on - strandat 1094.433 kb on - strand, within ECD_01026at 1095.027 kb on + strand, within ECD_01026

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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1,093,942 + -0.8
1,093,943 - +0.8
1,094,099 - +1.4
1,094,181 - +0.4
1,094,182 + -0.7
1,094,182 + -1.3
1,094,207 + -0.1
1,094,208 - +0.4
1,094,228 - +0.8
1,094,263 - +0.3
1,094,433 - ECD_01026 0.12 -0.3
1,095,027 + ECD_01026 0.36 -1.5

Or see this region's nucleotide sequence