Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00909 and ECD_00910 are separated by 129 nucleotides ECD_00910 and ECD_00911 are separated by 198 nucleotides
ECD_00909: ECD_00909 - ribosomal protein S12 methylthiotransferase accessory factor, at 959,962 to 961,722
_00909
ECD_00910: ECD_00910 - UPF0702 family putative inner membrane protein, at 961,852 to 962,544
_00910
ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831
_00911
Position (kb)
961
962
963 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 961.177 kb on - strand, within ECD_00909 at 961.177 kb on - strand, within ECD_00909 at 961.191 kb on - strand, within ECD_00909 at 961.220 kb on + strand, within ECD_00909 at 961.581 kb on + strand at 961.759 kb on + strand at 961.768 kb on + strand at 961.783 kb on - strand at 961.922 kb on + strand, within ECD_00910 at 961.926 kb on + strand, within ECD_00910 at 961.943 kb on + strand, within ECD_00910 at 962.056 kb on + strand, within ECD_00910 at 962.082 kb on - strand, within ECD_00910 at 962.086 kb on - strand, within ECD_00910 at 962.097 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.262 kb on - strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.369 kb on + strand, within ECD_00910 at 962.391 kb on + strand, within ECD_00910 at 962.429 kb on - strand, within ECD_00910 at 962.437 kb on - strand, within ECD_00910 at 962.571 kb on + strand at 962.681 kb on + strand at 962.682 kb on - strand at 962.684 kb on + strand at 962.715 kb on + strand at 962.715 kb on + strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.783 kb on + strand at 962.841 kb on + strand at 962.842 kb on - strand at 962.941 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 963.028 kb on + strand, within ECD_00911 at 963.175 kb on + strand, within ECD_00911 at 963.177 kb on + strand, within ECD_00911 at 963.178 kb on - strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.315 kb on - strand, within ECD_00911 at 963.481 kb on + strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 961,177 - ECD_00909 0.69 -0.3 961,177 - ECD_00909 0.69 -0.8 961,191 - ECD_00909 0.70 +0.1 961,220 + ECD_00909 0.71 -0.3 961,581 + +0.6 961,759 + +0.7 961,768 + -0.8 961,783 - +1.2 961,922 + ECD_00910 0.10 -0.6 961,926 + ECD_00910 0.11 +0.2 961,943 + ECD_00910 0.13 +0.1 962,056 + ECD_00910 0.29 -0.6 962,082 - ECD_00910 0.33 +0.3 962,086 - ECD_00910 0.34 +0.2 962,097 + ECD_00910 0.35 -0.6 962,261 + ECD_00910 0.59 +0.6 962,261 + ECD_00910 0.59 +2.2 962,262 - ECD_00910 0.59 -0.4 962,294 + ECD_00910 0.64 +0.1 962,294 + ECD_00910 0.64 +0.2 962,369 + ECD_00910 0.75 -0.7 962,391 + ECD_00910 0.78 +1.3 962,429 - ECD_00910 0.83 +1.0 962,437 - ECD_00910 0.84 -0.2 962,571 + -0.3 962,681 + -0.9 962,682 - -2.6 962,684 + -0.9 962,715 + -1.0 962,715 + +0.2 962,719 - -1.8 962,719 - -2.2 962,719 - -1.1 962,783 + -2.1 962,841 + -1.7 962,842 - -2.9 962,941 + ECD_00911 0.18 -1.9 962,948 + ECD_00911 0.19 -1.7 962,948 + ECD_00911 0.19 -1.2 963,028 + ECD_00911 0.26 -2.0 963,175 + ECD_00911 0.40 -1.5 963,177 + ECD_00911 0.40 -1.5 963,178 - ECD_00911 0.40 -0.9 963,314 + ECD_00911 0.52 -3.7 963,314 + ECD_00911 0.52 -2.8 963,315 - ECD_00911 0.53 -2.2 963,481 + ECD_00911 0.68 -2.5 963,482 - ECD_00911 0.68 -2.0 963,482 - ECD_00911 0.68 -2.6
Or see this region's nucleotide sequence