Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00839 and ECD_00840 overlap by 59 nucleotides ECD_00840 and ECD_00841 overlap by 140 nucleotides ECD_00841 and ECD_00842 overlap by 4 nucleotides ECD_00842 and ECD_00843 overlap by 14 nucleotides
ECD_00839: ECD_00839 - putative phage tail protein, at 884,726 to 885,172
_00839
ECD_00840: ECD_00840 - hypothetical protein, at 885,114 to 885,920
_00840
ECD_00841: ECD_00841 - hypothetical protein, at 885,781 to 886,602
_00841
ECD_00842: ECD_00842 - phage baseplate assembly protein, at 886,599 to 886,958
_00842
ECD_00843: ECD_00843 - phage baseplate assembly protein, at 886,945 to 887,853
_00843
Position (kb) 885
886
887 Strain fitness (log2 ratio) -1
0
1 at 884.964 kb on - strand, within ECD_00839 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.017 kb on + strand, within ECD_00841 at 886.023 kb on + strand, within ECD_00841 at 886.076 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.082 kb on + strand, within ECD_00841 at 886.274 kb on - strand, within ECD_00841 at 886.375 kb on + strand, within ECD_00841 at 886.471 kb on - strand, within ECD_00841 at 886.625 kb on + strand at 886.798 kb on - strand, within ECD_00842 at 886.798 kb on - strand, within ECD_00842 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.230 kb on + strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843 at 887.231 kb on - strand, within ECD_00843
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 884,964 - ECD_00839 0.53 -1.4 886,017 + ECD_00841 0.29 +0.4 886,017 + ECD_00841 0.29 -0.2 886,017 + ECD_00841 0.29 +0.1 886,023 + ECD_00841 0.29 -0.1 886,076 + ECD_00841 0.36 -0.2 886,082 + ECD_00841 0.37 -0.0 886,082 + ECD_00841 0.37 +0.0 886,274 - ECD_00841 0.60 -0.1 886,375 + ECD_00841 0.72 +0.6 886,471 - ECD_00841 0.84 -0.3 886,625 + -0.3 886,798 - ECD_00842 0.55 +0.9 886,798 - ECD_00842 0.55 -0.4 887,230 + ECD_00843 0.31 +0.2 887,230 + ECD_00843 0.31 -0.8 887,230 + ECD_00843 0.31 -0.9 887,231 - ECD_00843 0.31 +0.6 887,231 - ECD_00843 0.31 -0.7
Or see this region's nucleotide sequence