Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00645 and ECD_00646 are separated by 213 nucleotides ECD_00646 and ECD_00647 are separated by 40 nucleotides ECD_00647 and ECD_00648 are separated by 348 nucleotides
ECD_00645: ECD_00645 - phosphoglucomutase, at 673,432 to 675,072
_00645
ECD_00646: ECD_00646 - lipoprotein, at 675,286 to 675,780
_00646
ECD_00647: ECD_00647 - hypothetical protein, at 675,821 to 676,471
_00647
ECD_00648: ECD_00648 - putrescine/proton symporter: putrescine/ornithine antiporter, at 676,820 to 678,139
_00648
Position (kb) 675
676
677 Strain fitness (log2 ratio) -1
0
1 at 675.338 kb on + strand, within ECD_00646 at 675.338 kb on + strand, within ECD_00646 at 675.444 kb on + strand, within ECD_00646 at 675.445 kb on - strand, within ECD_00646 at 675.489 kb on - strand, within ECD_00646 at 675.541 kb on - strand, within ECD_00646 at 675.555 kb on + strand, within ECD_00646 at 675.581 kb on + strand, within ECD_00646 at 675.668 kb on - strand, within ECD_00646 at 675.668 kb on - strand, within ECD_00646 at 676.764 kb on - strand at 676.866 kb on + strand at 676.866 kb on + strand at 676.946 kb on - strand at 676.946 kb on - strand at 676.948 kb on - strand at 677.218 kb on - strand, within ECD_00648 at 677.240 kb on - strand, within ECD_00648 at 677.318 kb on - strand, within ECD_00648 at 677.387 kb on - strand, within ECD_00648 at 677.427 kb on + strand, within ECD_00648 at 677.428 kb on - strand, within ECD_00648 at 677.460 kb on - strand, within ECD_00648
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 675,338 + ECD_00646 0.11 -0.9 675,338 + ECD_00646 0.11 +1.0 675,444 + ECD_00646 0.32 -1.7 675,445 - ECD_00646 0.32 -0.6 675,489 - ECD_00646 0.41 +1.1 675,541 - ECD_00646 0.52 +0.1 675,555 + ECD_00646 0.54 -1.6 675,581 + ECD_00646 0.60 -0.3 675,668 - ECD_00646 0.77 -0.3 675,668 - ECD_00646 0.77 -0.2 676,764 - -0.2 676,866 + +0.9 676,866 + +0.2 676,946 - +0.1 676,946 - +0.6 676,948 - -0.5 677,218 - ECD_00648 0.30 +0.3 677,240 - ECD_00648 0.32 -0.0 677,318 - ECD_00648 0.38 -0.5 677,387 - ECD_00648 0.43 +0.5 677,427 + ECD_00648 0.46 +0.2 677,428 - ECD_00648 0.46 +0.4 677,460 - ECD_00648 0.48 +0.3
Or see this region's nucleotide sequence