Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00554 and ECD_00555 overlap by 4 nucleotides ECD_00555 and ECD_00556 overlap by 4 nucleotides ECD_00556 and ECD_00557 overlap by 4 nucleotides
ECD_00554: ECD_00554 - regulator of length of O-antigen component of lipopolysaccharide chains, at 578,741 to 579,874
_00554
ECD_00555: ECD_00555 - ferrienterobactin ABC transporter ATPase, at 579,871 to 580,686
_00555
ECD_00556: ECD_00556 - iron-enterobactin ABC transporter permease, at 580,683 to 581,675
_00556
ECD_00557: ECD_00557 - ferrienterobactin ABC transporter permease, at 581,672 to 582,676
_00557
Position (kb) 579
580
581 Strain fitness (log2 ratio) -1
0
1 at 579.328 kb on + strand, within ECD_00554 at 579.633 kb on + strand, within ECD_00554 at 579.761 kb on - strand at 579.867 kb on + strand at 579.868 kb on - strand at 580.075 kb on - strand, within ECD_00555 at 580.101 kb on + strand, within ECD_00555 at 580.195 kb on - strand, within ECD_00555 at 580.598 kb on - strand, within ECD_00555 at 581.074 kb on - strand, within ECD_00556 at 581.075 kb on + strand, within ECD_00556 at 581.076 kb on - strand, within ECD_00556 at 581.076 kb on - strand, within ECD_00556 at 581.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 579,328 + ECD_00554 0.52 -0.2 579,633 + ECD_00554 0.79 -0.5 579,761 - -0.2 579,867 + +0.4 579,868 - +0.4 580,075 - ECD_00555 0.25 -0.1 580,101 + ECD_00555 0.28 -0.2 580,195 - ECD_00555 0.40 -0.9 580,598 - ECD_00555 0.89 -1.7 581,074 - ECD_00556 0.39 -0.6 581,075 + ECD_00556 0.39 -1.0 581,076 - ECD_00556 0.40 -0.3 581,076 - ECD_00556 0.40 +0.7 581,595 + -0.8
Or see this region's nucleotide sequence