Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00484 and ECD_00485 are separated by 2 nucleotides ECD_00485 and ECD_t00007 are separated by 242 nucleotides ECD_t00007 and ECD_00486 are separated by 15 nucleotides ECD_00486 and ECD_00487 overlap by 145 nucleotides ECD_00487 and ECD_00488 are separated by 267 nucleotides ECD_00488 and ECD_00489 are separated by 98 nucleotides
ECD_00484: ECD_00484 - FimA-like protein, at 532,423 to 532,938
_00484
ECD_00485: ECD_00485 - response regulator family protein, at 532,941 to 533,573
_00485
ECD_t00007: ECD_t00007 - tRNA-Arg, at 533,816 to 533,892
_t00007
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
ECD_00487: ECD_00487 - Excisionase, at 534,927 to 535,328
_00487
ECD_00488: ECD_00488 - hypothetical protein, at 535,596 to 535,814
_00488
ECD_00489: ECD_00489 - hypothetical protein, at 535,913 to 536,227
_00489
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -1
0
1 at 533.534 kb on + strand at 533.949 kb on + strand at 533.961 kb on + strand at 534.026 kb on + strand, within ECD_00486 at 534.026 kb on + strand, within ECD_00486 at 534.031 kb on - strand, within ECD_00486 at 534.252 kb on + strand, within ECD_00486 at 534.253 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.303 kb on + strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.412 kb on + strand, within ECD_00486 at 534.413 kb on - strand, within ECD_00486 at 534.548 kb on - strand, within ECD_00486 at 534.613 kb on + strand, within ECD_00486 at 534.794 kb on - strand, within ECD_00486 at 535.040 kb on + strand at 535.040 kb on + strand at 535.041 kb on - strand at 535.115 kb on + strand, within ECD_00487 at 535.116 kb on - strand, within ECD_00487 at 535.193 kb on + strand, within ECD_00487 at 535.289 kb on - strand at 535.289 kb on - strand at 535.302 kb on + strand at 535.434 kb on + strand at 535.435 kb on - strand at 535.458 kb on - strand at 535.477 kb on - strand at 535.517 kb on + strand at 535.620 kb on - strand, within ECD_00488 at 535.845 kb on - strand at 535.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 533,534 + +0.6 533,949 + +0.5 533,961 + +0.6 534,026 + ECD_00486 0.10 +0.4 534,026 + ECD_00486 0.10 +0.1 534,031 - ECD_00486 0.11 +0.2 534,252 + ECD_00486 0.30 -0.2 534,253 - ECD_00486 0.30 +1.7 534,257 - ECD_00486 0.30 +0.7 534,257 - ECD_00486 0.30 +0.4 534,257 - ECD_00486 0.30 +0.0 534,257 - ECD_00486 0.30 +0.6 534,257 - ECD_00486 0.30 +0.6 534,303 + ECD_00486 0.34 +0.5 534,304 - ECD_00486 0.34 +0.3 534,304 - ECD_00486 0.34 +0.7 534,412 + ECD_00486 0.43 +0.1 534,413 - ECD_00486 0.43 +0.3 534,548 - ECD_00486 0.55 +1.3 534,613 + ECD_00486 0.61 +0.5 534,794 - ECD_00486 0.76 +0.2 535,040 + -0.2 535,040 + +0.1 535,041 - +0.4 535,115 + ECD_00487 0.47 +1.1 535,116 - ECD_00487 0.47 +0.4 535,193 + ECD_00487 0.66 -0.6 535,289 - -1.6 535,289 - +1.6 535,302 + -0.1 535,434 + +0.4 535,435 - +0.7 535,458 - -0.5 535,477 - +0.1 535,517 + +0.5 535,620 - ECD_00488 0.11 +0.2 535,845 - -0.0 535,845 - +0.8
Or see this region's nucleotide sequence