Strain Fitness in Escherichia coli BL21 around ECD_00403

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00401 and ECD_00402 are separated by 180 nucleotidesECD_00402 and ECD_00403 are separated by 29 nucleotidesECD_00403 and ECD_00404 are separated by 48 nucleotides ECD_00401: ECD_00401 - putative multidrug ABC transporter ATPase, at 439,682 to 441,463 _00401 ECD_00402: ECD_00402 - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB, at 441,644 to 441,982 _00402 ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298 _00403 ECD_00404: ECD_00404 - acyl-CoA thioesterase 2, at 443,347 to 444,207 _00404 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1at 441.076 kb on + strand, within ECD_00401at 441.080 kb on + strand, within ECD_00401at 441.080 kb on + strand, within ECD_00401at 441.256 kb on + strand, within ECD_00401at 441.257 kb on - strand, within ECD_00401at 441.395 kb on + strandat 441.395 kb on + strandat 441.395 kb on + strandat 441.396 kb on - strandat 441.396 kb on - strandat 441.396 kb on - strandat 441.517 kb on + strandat 441.518 kb on - strandat 441.594 kb on - strandat 441.643 kb on + strandat 441.644 kb on - strandat 441.644 kb on - strandat 441.644 kb on - strandat 441.715 kb on + strand, within ECD_00402at 441.794 kb on + strand, within ECD_00402at 442.113 kb on + strandat 442.262 kb on - strand, within ECD_00403at 442.363 kb on + strand, within ECD_00403at 442.369 kb on + strand, within ECD_00403at 442.369 kb on + strand, within ECD_00403at 442.495 kb on + strand, within ECD_00403at 442.495 kb on + strand, within ECD_00403at 442.581 kb on + strand, within ECD_00403at 442.702 kb on + strand, within ECD_00403at 442.702 kb on + strand, within ECD_00403at 442.703 kb on - strand, within ECD_00403at 442.703 kb on - strand, within ECD_00403at 442.839 kb on + strand, within ECD_00403at 442.909 kb on + strand, within ECD_00403at 442.947 kb on - strand, within ECD_00403at 442.977 kb on + strand, within ECD_00403at 442.977 kb on + strand, within ECD_00403at 442.978 kb on - strand, within ECD_00403at 443.055 kb on + strand, within ECD_00403at 443.056 kb on - strand, within ECD_00403at 443.288 kb on - strandat 443.395 kb on + strandat 443.468 kb on + strand, within ECD_00404at 443.468 kb on + strand, within ECD_00404at 443.468 kb on + strand, within ECD_00404at 443.469 kb on - strand, within ECD_00404at 443.573 kb on - strand, within ECD_00404at 443.618 kb on + strand, within ECD_00404at 443.618 kb on + strand, within ECD_00404at 443.619 kb on - strand, within ECD_00404at 443.764 kb on - strand, within ECD_00404at 443.982 kb on - strand, within ECD_00404at 443.997 kb on + strand, within ECD_00404at 443.998 kb on - strand, within ECD_00404at 444.037 kb on + strand, within ECD_00404at 444.075 kb on - strand, within ECD_00404at 444.116 kb on - strand, within ECD_00404at 444.173 kb on - strandat 444.207 kb on + strandat 444.207 kb on + strandat 444.208 kb on - strandat 444.210 kb on - strandat 444.256 kb on + strandat 444.257 kb on - strandat 444.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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441,076 + ECD_00401 0.78 +0.1
441,080 + ECD_00401 0.78 +0.4
441,080 + ECD_00401 0.78 +0.8
441,256 + ECD_00401 0.88 -0.1
441,257 - ECD_00401 0.88 -0.2
441,395 + -0.4
441,395 + +0.2
441,395 + -0.4
441,396 - -1.1
441,396 - +0.8
441,396 - +0.5
441,517 + +0.0
441,518 - -0.4
441,594 - -0.4
441,643 + -0.3
441,644 - -0.8
441,644 - +1.0
441,644 - +0.6
441,715 + ECD_00402 0.21 -0.5
441,794 + ECD_00402 0.44 -1.0
442,113 + +0.1
442,262 - ECD_00403 0.19 +0.0
442,363 + ECD_00403 0.27 +0.0
442,369 + ECD_00403 0.28 +0.3
442,369 + ECD_00403 0.28 -0.1
442,495 + ECD_00403 0.38 +0.0
442,495 + ECD_00403 0.38 -0.9
442,581 + ECD_00403 0.44 -0.2
442,702 + ECD_00403 0.54 -0.1
442,702 + ECD_00403 0.54 +0.4
442,703 - ECD_00403 0.54 +0.1
442,703 - ECD_00403 0.54 -0.4
442,839 + ECD_00403 0.64 +0.4
442,909 + ECD_00403 0.70 -0.2
442,947 - ECD_00403 0.73 -0.7
442,977 + ECD_00403 0.75 +0.1
442,977 + ECD_00403 0.75 -0.6
442,978 - ECD_00403 0.75 +0.0
443,055 + ECD_00403 0.81 -1.2
443,056 - ECD_00403 0.81 +0.7
443,288 - +1.2
443,395 + -0.1
443,468 + ECD_00404 0.14 -0.5
443,468 + ECD_00404 0.14 -0.2
443,468 + ECD_00404 0.14 -0.5
443,469 - ECD_00404 0.14 -0.3
443,573 - ECD_00404 0.26 +0.7
443,618 + ECD_00404 0.31 +1.2
443,618 + ECD_00404 0.31 -0.6
443,619 - ECD_00404 0.32 -1.0
443,764 - ECD_00404 0.48 -1.1
443,982 - ECD_00404 0.74 -0.2
443,997 + ECD_00404 0.75 -1.3
443,998 - ECD_00404 0.76 +0.3
444,037 + ECD_00404 0.80 -0.1
444,075 - ECD_00404 0.85 +0.7
444,116 - ECD_00404 0.89 -0.1
444,173 - +0.4
444,207 + -0.2
444,207 + -0.3
444,208 - +0.9
444,210 - +0.2
444,256 + +0.8
444,257 - -1.3
444,292 + +0.1

Or see this region's nucleotide sequence