Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00384 and ECD_00385 are separated by 43 nucleotides ECD_00385 and ECD_00386 are separated by 304 nucleotides ECD_00386 and ECD_00387 are separated by 343 nucleotides
ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229
_00384
ECD_00385: ECD_00385 - putative lipoprotein, at 421,273 to 421,851
_00385
ECD_00386: ECD_00386 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC, at 422,156 to 422,473
_00386
ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115
_00387
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 421.238 kb on - strand at 421.324 kb on - strand at 421.324 kb on - strand at 421.324 kb on - strand at 421.407 kb on - strand, within ECD_00385 at 421.491 kb on - strand, within ECD_00385 at 421.521 kb on - strand, within ECD_00385 at 421.521 kb on - strand, within ECD_00385 at 421.575 kb on - strand, within ECD_00385 at 421.575 kb on - strand, within ECD_00385 at 421.717 kb on + strand, within ECD_00385 at 421.758 kb on + strand, within ECD_00385 at 421.813 kb on - strand at 421.813 kb on - strand at 421.813 kb on - strand at 421.873 kb on + strand at 421.874 kb on - strand at 421.874 kb on - strand at 421.942 kb on + strand at 422.032 kb on + strand at 422.066 kb on + strand at 422.066 kb on + strand at 422.067 kb on - strand at 422.076 kb on + strand at 422.175 kb on + strand at 422.220 kb on + strand, within ECD_00386 at 422.365 kb on + strand, within ECD_00386 at 422.366 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.390 kb on - strand, within ECD_00386 at 422.393 kb on + strand, within ECD_00386 at 422.393 kb on + strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.394 kb on - strand, within ECD_00386 at 422.398 kb on + strand, within ECD_00386 at 422.399 kb on - strand, within ECD_00386 at 422.399 kb on - strand, within ECD_00386 at 422.666 kb on + strand at 422.730 kb on - strand at 422.731 kb on + strand at 422.810 kb on + strand at 422.868 kb on - strand at 422.900 kb on + strand at 422.932 kb on + strand at 422.936 kb on + strand at 422.936 kb on + strand at 423.090 kb on + strand, within ECD_00387 at 423.105 kb on + strand, within ECD_00387 at 423.129 kb on + strand, within ECD_00387 at 423.129 kb on + strand, within ECD_00387 at 423.251 kb on + strand, within ECD_00387 at 423.395 kb on + strand, within ECD_00387
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 421,238 - -0.1 421,324 - -0.8 421,324 - -1.9 421,324 - -0.3 421,407 - ECD_00385 0.23 -0.2 421,491 - ECD_00385 0.38 -0.7 421,521 - ECD_00385 0.43 -0.3 421,521 - ECD_00385 0.43 -0.5 421,575 - ECD_00385 0.52 -0.3 421,575 - ECD_00385 0.52 -0.0 421,717 + ECD_00385 0.77 -0.5 421,758 + ECD_00385 0.84 -1.3 421,813 - -1.1 421,813 - -1.2 421,813 - -1.4 421,873 + -0.7 421,874 - -0.1 421,874 - -0.2 421,942 + -0.3 422,032 + +0.6 422,066 + +0.9 422,066 + +0.1 422,067 - +0.1 422,076 + +0.5 422,175 + -0.4 422,220 + ECD_00386 0.20 +0.7 422,365 + ECD_00386 0.66 +0.3 422,366 - ECD_00386 0.66 +1.1 422,390 - ECD_00386 0.74 +1.0 422,390 - ECD_00386 0.74 +0.3 422,390 - ECD_00386 0.74 -0.0 422,393 + ECD_00386 0.75 +0.2 422,393 + ECD_00386 0.75 +0.4 422,394 - ECD_00386 0.75 -1.0 422,394 - ECD_00386 0.75 -0.7 422,394 - ECD_00386 0.75 +0.9 422,394 - ECD_00386 0.75 -0.0 422,398 + ECD_00386 0.76 -0.3 422,399 - ECD_00386 0.76 -0.0 422,399 - ECD_00386 0.76 +0.1 422,666 + -0.5 422,730 - +1.7 422,731 + -0.2 422,810 + -0.2 422,868 - -1.1 422,900 + -1.3 422,932 + -1.0 422,936 + +0.2 422,936 + -0.8 423,090 + ECD_00387 0.21 -0.5 423,105 + ECD_00387 0.22 +0.1 423,129 + ECD_00387 0.24 +0.4 423,129 + ECD_00387 0.24 -0.2 423,251 + ECD_00387 0.33 -0.1 423,395 + ECD_00387 0.44 +0.0
Or see this region's nucleotide sequence