Strain Fitness in Escherichia coli BL21 around ECD_00384

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00383 and ECD_00384 are separated by 461 nucleotidesECD_00384 and ECD_00385 are separated by 43 nucleotidesECD_00385 and ECD_00386 are separated by 304 nucleotides ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292 _00383 ECD_00384: ECD_00384 - muropeptide transporter, at 419,754 to 421,229 _00384 ECD_00385: ECD_00385 - putative lipoprotein, at 421,273 to 421,851 _00385 ECD_00386: ECD_00386 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC, at 422,156 to 422,473 _00386 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -2 -1 0 1at 419.000 kb on - strand, within ECD_00383at 419.000 kb on - strand, within ECD_00383at 419.004 kb on + strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.005 kb on - strand, within ECD_00383at 419.009 kb on - strand, within ECD_00383at 419.060 kb on + strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.061 kb on - strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.064 kb on + strand, within ECD_00383at 419.065 kb on - strand, within ECD_00383at 419.204 kb on - strandat 419.234 kb on - strandat 419.234 kb on - strandat 419.249 kb on - strandat 419.358 kb on - strandat 419.362 kb on + strandat 419.415 kb on - strandat 419.415 kb on - strandat 419.428 kb on + strandat 419.429 kb on - strandat 419.827 kb on - strandat 419.902 kb on - strand, within ECD_00384at 420.005 kb on + strand, within ECD_00384at 420.008 kb on - strand, within ECD_00384at 420.072 kb on + strand, within ECD_00384at 420.076 kb on + strand, within ECD_00384at 420.076 kb on + strand, within ECD_00384at 420.077 kb on - strand, within ECD_00384at 420.131 kb on - strand, within ECD_00384at 420.142 kb on - strand, within ECD_00384at 420.191 kb on + strand, within ECD_00384at 420.192 kb on - strand, within ECD_00384at 420.195 kb on - strand, within ECD_00384at 420.195 kb on - strand, within ECD_00384at 420.281 kb on - strand, within ECD_00384at 420.398 kb on - strand, within ECD_00384at 420.527 kb on + strand, within ECD_00384at 420.529 kb on + strand, within ECD_00384at 420.539 kb on + strand, within ECD_00384at 420.539 kb on + strand, within ECD_00384at 420.668 kb on + strand, within ECD_00384at 420.700 kb on + strand, within ECD_00384at 420.725 kb on + strand, within ECD_00384at 420.955 kb on - strand, within ECD_00384at 420.955 kb on - strand, within ECD_00384at 420.958 kb on - strand, within ECD_00384at 421.016 kb on - strand, within ECD_00384at 421.055 kb on - strand, within ECD_00384at 421.100 kb on + strandat 421.125 kb on + strandat 421.125 kb on + strandat 421.126 kb on - strandat 421.238 kb on - strandat 421.324 kb on - strandat 421.324 kb on - strandat 421.324 kb on - strandat 421.407 kb on - strand, within ECD_00385at 421.491 kb on - strand, within ECD_00385at 421.521 kb on - strand, within ECD_00385at 421.521 kb on - strand, within ECD_00385at 421.575 kb on - strand, within ECD_00385at 421.575 kb on - strand, within ECD_00385at 421.717 kb on + strand, within ECD_00385at 421.758 kb on + strand, within ECD_00385at 421.813 kb on - strandat 421.813 kb on - strandat 421.813 kb on - strandat 421.873 kb on + strandat 421.874 kb on - strandat 421.874 kb on - strandat 421.942 kb on + strandat 422.032 kb on + strandat 422.066 kb on + strandat 422.066 kb on + strandat 422.067 kb on - strandat 422.076 kb on + strandat 422.175 kb on + strandat 422.220 kb on + strand, within ECD_00386

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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419,000 - ECD_00383 0.69 -0.8
419,000 - ECD_00383 0.69 -0.2
419,004 + ECD_00383 0.70 +0.3
419,005 - ECD_00383 0.70 -0.1
419,005 - ECD_00383 0.70 +0.4
419,005 - ECD_00383 0.70 +0.1
419,009 - ECD_00383 0.70 -0.2
419,060 + ECD_00383 0.75 +0.8
419,061 - ECD_00383 0.76 +0.4
419,061 - ECD_00383 0.76 -0.6
419,064 + ECD_00383 0.76 -0.0
419,064 + ECD_00383 0.76 -0.2
419,064 + ECD_00383 0.76 +0.8
419,065 - ECD_00383 0.76 -0.5
419,204 - +0.4
419,234 - -0.3
419,234 - +0.3
419,249 - -0.2
419,358 - +0.1
419,362 + -0.2
419,415 - -0.8
419,415 - -0.5
419,428 + +0.7
419,429 - +0.7
419,827 - +0.3
419,902 - ECD_00384 0.10 +0.4
420,005 + ECD_00384 0.17 +1.1
420,008 - ECD_00384 0.17 +0.1
420,072 + ECD_00384 0.22 -0.0
420,076 + ECD_00384 0.22 -0.0
420,076 + ECD_00384 0.22 -0.3
420,077 - ECD_00384 0.22 +0.0
420,131 - ECD_00384 0.26 -0.5
420,142 - ECD_00384 0.26 -0.3
420,191 + ECD_00384 0.30 -0.1
420,192 - ECD_00384 0.30 -0.1
420,195 - ECD_00384 0.30 -1.0
420,195 - ECD_00384 0.30 +0.1
420,281 - ECD_00384 0.36 +1.0
420,398 - ECD_00384 0.44 -0.2
420,527 + ECD_00384 0.52 +0.0
420,529 + ECD_00384 0.53 -0.7
420,539 + ECD_00384 0.53 -1.3
420,539 + ECD_00384 0.53 +0.3
420,668 + ECD_00384 0.62 -0.7
420,700 + ECD_00384 0.64 -0.1
420,725 + ECD_00384 0.66 -0.3
420,955 - ECD_00384 0.81 -0.4
420,955 - ECD_00384 0.81 +0.7
420,958 - ECD_00384 0.82 -0.4
421,016 - ECD_00384 0.86 -0.2
421,055 - ECD_00384 0.88 -0.4
421,100 + +0.4
421,125 + +0.1
421,125 + -0.0
421,126 - -0.0
421,238 - -0.1
421,324 - -0.8
421,324 - -1.9
421,324 - -0.3
421,407 - ECD_00385 0.23 -0.2
421,491 - ECD_00385 0.38 -0.7
421,521 - ECD_00385 0.43 -0.3
421,521 - ECD_00385 0.43 -0.5
421,575 - ECD_00385 0.52 -0.3
421,575 - ECD_00385 0.52 -0.0
421,717 + ECD_00385 0.77 -0.5
421,758 + ECD_00385 0.84 -1.3
421,813 - -1.1
421,813 - -1.2
421,813 - -1.4
421,873 + -0.7
421,874 - -0.1
421,874 - -0.2
421,942 + -0.3
422,032 + +0.6
422,066 + +0.9
422,066 + +0.1
422,067 - +0.1
422,076 + +0.5
422,175 + -0.4
422,220 + ECD_00386 0.20 +0.7

Or see this region's nucleotide sequence