Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00379 and ECD_00380 are separated by 11 nucleotides ECD_00380 and ECD_00381 overlap by 1 nucleotides ECD_00381 and ECD_00382 overlap by 11 nucleotides ECD_00382 and ECD_00383 are separated by 21 nucleotides
ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387
_00379
ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728
_00380
ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342
_00381
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
ECD_00383: ECD_00383 - cytochrome o ubiquinol oxidase subunit II, at 418,345 to 419,292
_00383
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -1
0
1 at 415.379 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.451 kb on - strand, within ECD_00380 at 415.716 kb on + strand at 415.716 kb on + strand at 415.729 kb on + strand at 415.730 kb on - strand at 415.730 kb on - strand at 415.858 kb on - strand, within ECD_00381 at 416.049 kb on - strand, within ECD_00381 at 416.071 kb on + strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.096 kb on - strand, within ECD_00381 at 416.162 kb on + strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.208 kb on - strand, within ECD_00381 at 416.330 kb on + strand at 416.358 kb on + strand at 416.359 kb on - strand at 416.361 kb on + strand at 416.362 kb on - strand at 416.414 kb on + strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.415 kb on - strand at 416.417 kb on + strand at 416.496 kb on + strand at 416.572 kb on - strand, within ECD_00382 at 416.601 kb on + strand, within ECD_00382 at 416.603 kb on + strand, within ECD_00382 at 416.604 kb on - strand, within ECD_00382 at 416.676 kb on - strand, within ECD_00382 at 416.775 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 416.920 kb on - strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.212 kb on + strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.213 kb on - strand, within ECD_00382 at 417.358 kb on - strand, within ECD_00382 at 417.384 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.500 kb on + strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.501 kb on - strand, within ECD_00382 at 417.552 kb on - strand, within ECD_00382 at 417.606 kb on + strand, within ECD_00382 at 417.614 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.728 kb on - strand, within ECD_00382 at 417.730 kb on - strand, within ECD_00382 at 417.782 kb on + strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.783 kb on - strand, within ECD_00382 at 417.880 kb on - strand, within ECD_00382 at 417.893 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 417.997 kb on - strand, within ECD_00382 at 418.028 kb on + strand, within ECD_00382 at 418.140 kb on + strand at 418.140 kb on + strand at 418.140 kb on + strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.141 kb on - strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.162 kb on - strand at 418.196 kb on + strand at 418.197 kb on - strand at 418.197 kb on - strand at 418.214 kb on + strand at 418.214 kb on + strand at 418.279 kb on - strand at 418.279 kb on - strand at 418.327 kb on + strand at 418.450 kb on - strand, within ECD_00383 at 418.499 kb on + strand, within ECD_00383 at 418.514 kb on + strand, within ECD_00383 at 418.515 kb on - strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.626 kb on + strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.627 kb on - strand, within ECD_00383 at 418.677 kb on + strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 418.686 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.000 kb on - strand, within ECD_00383 at 419.004 kb on + strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.005 kb on - strand, within ECD_00383 at 419.009 kb on - strand, within ECD_00383 at 419.060 kb on + strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.061 kb on - strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.064 kb on + strand, within ECD_00383 at 419.065 kb on - strand, within ECD_00383 at 419.204 kb on - strand at 419.234 kb on - strand at 419.234 kb on - strand at 419.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 415,379 - +0.5 415,401 - -0.5 415,401 - -0.1 415,401 - -0.3 415,419 - +0.4 415,419 - +0.2 415,419 - -0.3 415,419 - +0.3 415,451 - ECD_00380 0.16 -0.2 415,716 + -0.6 415,716 + -0.2 415,729 + -0.6 415,730 - +0.5 415,730 - +0.4 415,858 - ECD_00381 0.21 +0.4 416,049 - ECD_00381 0.52 +0.4 416,071 + ECD_00381 0.56 +0.4 416,072 - ECD_00381 0.56 +0.0 416,072 - ECD_00381 0.56 -0.2 416,096 - ECD_00381 0.60 +0.6 416,162 + ECD_00381 0.71 +0.5 416,204 - ECD_00381 0.77 +0.3 416,204 - ECD_00381 0.77 +0.4 416,207 + ECD_00381 0.78 +0.6 416,207 + ECD_00381 0.78 +0.7 416,207 + ECD_00381 0.78 +0.3 416,208 - ECD_00381 0.78 +0.2 416,330 + -0.4 416,358 + -0.2 416,359 - +0.1 416,361 + -0.0 416,362 - -1.1 416,414 + -1.6 416,415 - +0.4 416,415 - -0.1 416,415 - +0.3 416,417 + -0.1 416,496 + -0.3 416,572 - ECD_00382 0.12 -0.1 416,601 + ECD_00382 0.14 -0.6 416,603 + ECD_00382 0.14 -0.2 416,604 - ECD_00382 0.14 +0.5 416,676 - ECD_00382 0.17 +0.1 416,775 - ECD_00382 0.22 -0.5 416,920 - ECD_00382 0.30 +0.5 416,920 - ECD_00382 0.30 +0.6 417,212 + ECD_00382 0.44 -0.1 417,212 + ECD_00382 0.44 -0.1 417,213 - ECD_00382 0.44 +0.2 417,213 - ECD_00382 0.44 -0.2 417,213 - ECD_00382 0.44 -0.0 417,213 - ECD_00382 0.44 +0.8 417,213 - ECD_00382 0.44 +0.6 417,213 - ECD_00382 0.44 +0.4 417,213 - ECD_00382 0.44 -1.1 417,358 - ECD_00382 0.52 -1.0 417,384 + ECD_00382 0.53 +0.2 417,500 + ECD_00382 0.59 -0.5 417,500 + ECD_00382 0.59 +0.5 417,501 - ECD_00382 0.59 +0.1 417,501 - ECD_00382 0.59 +0.3 417,501 - ECD_00382 0.59 +0.3 417,501 - ECD_00382 0.59 -0.3 417,501 - ECD_00382 0.59 +1.1 417,501 - ECD_00382 0.59 +0.3 417,501 - ECD_00382 0.59 +0.6 417,501 - ECD_00382 0.59 +0.3 417,552 - ECD_00382 0.61 +0.6 417,606 + ECD_00382 0.64 +0.2 417,614 - ECD_00382 0.64 -0.1 417,728 - ECD_00382 0.70 +0.1 417,728 - ECD_00382 0.70 -0.5 417,730 - ECD_00382 0.70 +0.1 417,782 + ECD_00382 0.73 -0.3 417,783 - ECD_00382 0.73 +0.8 417,783 - ECD_00382 0.73 +0.3 417,783 - ECD_00382 0.73 -0.2 417,880 - ECD_00382 0.78 +0.3 417,893 - ECD_00382 0.78 +0.7 417,997 - ECD_00382 0.84 -0.2 417,997 - ECD_00382 0.84 +0.1 418,028 + ECD_00382 0.85 -0.8 418,140 + +0.5 418,140 + +0.4 418,140 + -0.1 418,141 - -0.1 418,141 - -0.1 418,141 - -0.9 418,141 - -0.2 418,141 - -0.5 418,141 - +0.1 418,142 + -0.5 418,142 + -0.0 418,142 + +0.5 418,143 - -0.5 418,143 - -0.0 418,143 - -0.1 418,143 - -0.4 418,143 - -0.6 418,143 - +0.4 418,143 - -0.1 418,143 - -0.1 418,143 - +1.0 418,143 - -0.2 418,162 - +0.3 418,196 + -0.4 418,197 - -0.2 418,197 - +0.6 418,214 + -0.1 418,214 + -0.2 418,279 - +0.1 418,279 - -0.5 418,327 + +0.9 418,450 - ECD_00383 0.11 -0.1 418,499 + ECD_00383 0.16 -0.4 418,514 + ECD_00383 0.18 -1.6 418,515 - ECD_00383 0.18 -0.7 418,626 + ECD_00383 0.30 -0.3 418,626 + ECD_00383 0.30 +0.2 418,627 - ECD_00383 0.30 -0.1 418,627 - ECD_00383 0.30 -0.2 418,677 + ECD_00383 0.35 +0.7 418,686 - ECD_00383 0.36 -0.1 418,686 - ECD_00383 0.36 -0.5 418,686 - ECD_00383 0.36 +0.5 418,686 - ECD_00383 0.36 -0.1 418,686 - ECD_00383 0.36 -0.2 419,000 - ECD_00383 0.69 -0.8 419,000 - ECD_00383 0.69 -0.2 419,004 + ECD_00383 0.70 +0.3 419,005 - ECD_00383 0.70 -0.1 419,005 - ECD_00383 0.70 +0.4 419,005 - ECD_00383 0.70 +0.1 419,009 - ECD_00383 0.70 -0.2 419,060 + ECD_00383 0.75 +0.8 419,061 - ECD_00383 0.76 +0.4 419,061 - ECD_00383 0.76 -0.6 419,064 + ECD_00383 0.76 -0.0 419,064 + ECD_00383 0.76 -0.2 419,064 + ECD_00383 0.76 +0.8 419,065 - ECD_00383 0.76 -0.5 419,204 - +0.4 419,234 - -0.3 419,234 - +0.3 419,249 - -0.2
Or see this region's nucleotide sequence