Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00377 and ECD_00378 overlap by 17 nucleotides ECD_00378 and ECD_00379 are separated by 118 nucleotides ECD_00379 and ECD_00380 are separated by 11 nucleotides ECD_00380 and ECD_00381 overlap by 1 nucleotides ECD_00381 and ECD_00382 overlap by 11 nucleotides
ECD_00377: ECD_00377 - putative acetyltransferase, at 413,475 to 414,017
_00377
ECD_00378: ECD_00378 - hypothetical protein, at 414,001 to 414,378
_00378
ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387
_00379
ECD_00380: ECD_00380 - cytochrome o ubiquinol oxidase subunit IV, at 415,399 to 415,728
_00380
ECD_00381: ECD_00381 - cytochrome o ubiquinol oxidase subunit III, at 415,728 to 416,342
_00381
ECD_00382: ECD_00382 - cytochrome o ubiquinol oxidase subunit I, at 416,332 to 418,323
_00382
Position (kb) 414
415
416 Strain fitness (log2 ratio) -1
0
1 at 413.515 kb on - strand at 413.515 kb on - strand at 413.613 kb on - strand, within ECD_00377 at 413.840 kb on + strand, within ECD_00377 at 413.966 kb on - strand at 413.970 kb on - strand at 413.994 kb on - strand at 414.313 kb on + strand, within ECD_00378 at 414.329 kb on - strand, within ECD_00378 at 414.368 kb on - strand at 414.438 kb on - strand at 414.457 kb on - strand at 414.471 kb on - strand at 414.520 kb on + strand at 414.632 kb on - strand, within ECD_00379 at 414.653 kb on + strand, within ECD_00379 at 414.690 kb on + strand, within ECD_00379 at 414.690 kb on + strand, within ECD_00379 at 414.691 kb on - strand, within ECD_00379 at 414.694 kb on + strand, within ECD_00379 at 414.695 kb on - strand, within ECD_00379 at 414.695 kb on - strand, within ECD_00379 at 414.751 kb on + strand, within ECD_00379 at 414.753 kb on + strand, within ECD_00379 at 414.791 kb on + strand, within ECD_00379 at 414.856 kb on - strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.009 kb on - strand, within ECD_00379 at 415.017 kb on + strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.029 kb on + strand, within ECD_00379 at 415.030 kb on - strand, within ECD_00379 at 415.094 kb on - strand, within ECD_00379 at 415.213 kb on - strand, within ECD_00379 at 415.266 kb on + strand, within ECD_00379 at 415.271 kb on - strand, within ECD_00379 at 415.379 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.401 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.419 kb on - strand at 415.451 kb on - strand, within ECD_00380 at 415.716 kb on + strand at 415.716 kb on + strand at 415.729 kb on + strand at 415.730 kb on - strand at 415.730 kb on - strand at 415.858 kb on - strand, within ECD_00381 at 416.049 kb on - strand, within ECD_00381 at 416.071 kb on + strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.072 kb on - strand, within ECD_00381 at 416.096 kb on - strand, within ECD_00381 at 416.162 kb on + strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.204 kb on - strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.207 kb on + strand, within ECD_00381 at 416.208 kb on - strand, within ECD_00381 at 416.330 kb on + strand at 416.358 kb on + strand at 416.359 kb on - strand at 416.361 kb on + strand at 416.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 413,515 - +0.0 413,515 - -0.1 413,613 - ECD_00377 0.25 -0.2 413,840 + ECD_00377 0.67 -0.4 413,966 - +0.4 413,970 - -0.0 413,994 - -0.1 414,313 + ECD_00378 0.83 +0.6 414,329 - ECD_00378 0.87 -0.0 414,368 - +0.4 414,438 - +0.2 414,457 - +0.2 414,471 - -0.6 414,520 + -0.6 414,632 - ECD_00379 0.15 -0.2 414,653 + ECD_00379 0.18 -0.2 414,690 + ECD_00379 0.22 +0.2 414,690 + ECD_00379 0.22 -0.6 414,691 - ECD_00379 0.22 -0.2 414,694 + ECD_00379 0.22 -1.1 414,695 - ECD_00379 0.22 +0.4 414,695 - ECD_00379 0.22 +0.1 414,751 + ECD_00379 0.29 +0.4 414,753 + ECD_00379 0.29 +0.3 414,791 + ECD_00379 0.33 -0.6 414,856 - ECD_00379 0.40 +0.1 415,008 + ECD_00379 0.57 -0.5 415,008 + ECD_00379 0.57 -0.2 415,009 - ECD_00379 0.57 +0.9 415,017 + ECD_00379 0.58 +0.0 415,018 - ECD_00379 0.58 -0.2 415,018 - ECD_00379 0.58 +0.3 415,029 + ECD_00379 0.60 -0.9 415,030 - ECD_00379 0.60 +0.4 415,094 - ECD_00379 0.67 -0.4 415,213 - ECD_00379 0.80 +0.7 415,266 + ECD_00379 0.86 -0.2 415,271 - ECD_00379 0.87 +0.3 415,379 - +0.5 415,401 - -0.5 415,401 - -0.1 415,401 - -0.3 415,419 - +0.4 415,419 - +0.2 415,419 - -0.3 415,419 - +0.3 415,451 - ECD_00380 0.16 -0.2 415,716 + -0.6 415,716 + -0.2 415,729 + -0.6 415,730 - +0.5 415,730 - +0.4 415,858 - ECD_00381 0.21 +0.4 416,049 - ECD_00381 0.52 +0.4 416,071 + ECD_00381 0.56 +0.4 416,072 - ECD_00381 0.56 +0.0 416,072 - ECD_00381 0.56 -0.2 416,096 - ECD_00381 0.60 +0.6 416,162 + ECD_00381 0.71 +0.5 416,204 - ECD_00381 0.77 +0.3 416,204 - ECD_00381 0.77 +0.4 416,207 + ECD_00381 0.78 +0.6 416,207 + ECD_00381 0.78 +0.7 416,207 + ECD_00381 0.78 +0.3 416,208 - ECD_00381 0.78 +0.2 416,330 + -0.4 416,358 + -0.2 416,359 - +0.1 416,361 + -0.0 416,362 - -1.1
Or see this region's nucleotide sequence