Strain Fitness in Escherichia coli BL21 around ECD_00343

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00342 and ECD_00343 are separated by 124 nucleotidesECD_00343 and ECD_00344 are separated by 244 nucleotides ECD_00342: ECD_00342 - nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function, at 374,510 to 375,421 _00342 ECD_00343: ECD_00343 - manno(fructo)kinase, at 375,546 to 376,454 _00343 ECD_00344: ECD_00344 - L-arabinose-inducible putative transporter, MFS family, at 376,699 to 377,883 _00344 Position (kb) 375 376 377Strain fitness (log2 ratio) -2 -1 0 1 2at 374.873 kb on - strand, within ECD_00342at 374.931 kb on - strand, within ECD_00342at 374.957 kb on - strand, within ECD_00342at 374.975 kb on - strand, within ECD_00342at 375.011 kb on - strand, within ECD_00342at 375.011 kb on - strand, within ECD_00342at 375.131 kb on - strand, within ECD_00342at 375.181 kb on + strand, within ECD_00342at 375.226 kb on + strand, within ECD_00342at 375.326 kb on - strand, within ECD_00342at 375.326 kb on - strand, within ECD_00342at 375.424 kb on + strandat 375.510 kb on + strandat 375.553 kb on + strandat 375.553 kb on + strandat 375.554 kb on - strandat 375.554 kb on - strandat 375.619 kb on - strandat 375.725 kb on - strand, within ECD_00343at 375.728 kb on + strand, within ECD_00343at 375.729 kb on - strand, within ECD_00343at 375.821 kb on - strand, within ECD_00343at 375.863 kb on + strand, within ECD_00343at 375.889 kb on + strand, within ECD_00343at 375.890 kb on - strand, within ECD_00343at 375.890 kb on - strand, within ECD_00343at 375.919 kb on + strand, within ECD_00343at 376.074 kb on + strand, within ECD_00343at 376.075 kb on - strand, within ECD_00343at 376.094 kb on + strand, within ECD_00343at 376.107 kb on - strand, within ECD_00343at 376.315 kb on + strand, within ECD_00343at 376.325 kb on - strand, within ECD_00343at 376.453 kb on - strandat 376.453 kb on - strandat 376.570 kb on - strandat 376.674 kb on - strandat 376.678 kb on - strandat 376.693 kb on + strandat 376.693 kb on + strandat 376.695 kb on + strandat 376.700 kb on + strandat 376.752 kb on - strandat 376.817 kb on + strandat 376.817 kb on + strandat 376.821 kb on + strand, within ECD_00344at 376.822 kb on - strand, within ECD_00344at 376.822 kb on - strand, within ECD_00344at 376.823 kb on + strand, within ECD_00344at 376.849 kb on - strand, within ECD_00344at 376.849 kb on - strand, within ECD_00344at 376.860 kb on - strand, within ECD_00344at 376.860 kb on - strand, within ECD_00344at 376.913 kb on - strand, within ECD_00344at 376.949 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.156 kb on - strand, within ECD_00344at 377.167 kb on - strand, within ECD_00344at 377.210 kb on + strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.211 kb on - strand, within ECD_00344at 377.223 kb on - strand, within ECD_00344at 377.223 kb on - strand, within ECD_00344at 377.383 kb on - strand, within ECD_00344

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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374,873 - ECD_00342 0.40 -1.9
374,931 - ECD_00342 0.46 +1.3
374,957 - ECD_00342 0.49 +2.7
374,975 - ECD_00342 0.51 -0.3
375,011 - ECD_00342 0.55 +1.2
375,011 - ECD_00342 0.55 -0.6
375,131 - ECD_00342 0.68 +0.5
375,181 + ECD_00342 0.74 -0.0
375,226 + ECD_00342 0.79 -0.4
375,326 - ECD_00342 0.89 -0.1
375,326 - ECD_00342 0.89 +1.7
375,424 + -0.1
375,510 + -0.2
375,553 + -0.3
375,553 + -0.2
375,554 - +0.9
375,554 - -0.6
375,619 - -0.1
375,725 - ECD_00343 0.20 -0.3
375,728 + ECD_00343 0.20 +0.1
375,729 - ECD_00343 0.20 -0.2
375,821 - ECD_00343 0.30 -0.6
375,863 + ECD_00343 0.35 -0.8
375,889 + ECD_00343 0.38 -0.5
375,890 - ECD_00343 0.38 -0.2
375,890 - ECD_00343 0.38 -0.2
375,919 + ECD_00343 0.41 -0.8
376,074 + ECD_00343 0.58 +0.4
376,075 - ECD_00343 0.58 +0.1
376,094 + ECD_00343 0.60 +0.6
376,107 - ECD_00343 0.62 +0.2
376,315 + ECD_00343 0.85 -0.0
376,325 - ECD_00343 0.86 -0.7
376,453 - -0.3
376,453 - +0.1
376,570 - +0.8
376,674 - -0.3
376,678 - -0.2
376,693 + -0.0
376,693 + -0.2
376,695 + -0.8
376,700 + +0.4
376,752 - +0.1
376,817 + -0.4
376,817 + +0.2
376,821 + ECD_00344 0.10 -0.9
376,822 - ECD_00344 0.10 -0.6
376,822 - ECD_00344 0.10 +0.5
376,823 + ECD_00344 0.10 +1.2
376,849 - ECD_00344 0.13 -0.1
376,849 - ECD_00344 0.13 +0.1
376,860 - ECD_00344 0.14 +1.4
376,860 - ECD_00344 0.14 -0.3
376,913 - ECD_00344 0.18 -0.5
376,949 - ECD_00344 0.21 -0.2
377,156 - ECD_00344 0.39 -0.8
377,156 - ECD_00344 0.39 +0.1
377,156 - ECD_00344 0.39 -0.3
377,167 - ECD_00344 0.39 -0.7
377,210 + ECD_00344 0.43 -0.1
377,211 - ECD_00344 0.43 +0.7
377,211 - ECD_00344 0.43 -0.7
377,211 - ECD_00344 0.43 +0.1
377,211 - ECD_00344 0.43 +0.4
377,211 - ECD_00344 0.43 +0.5
377,211 - ECD_00344 0.43 -0.1
377,223 - ECD_00344 0.44 +0.0
377,223 - ECD_00344 0.44 -0.3
377,383 - ECD_00344 0.58 -0.1

Or see this region's nucleotide sequence