Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00291 and ECD_00292 are separated by 336 nucleotides ECD_00292 and ECD_00293 are separated by 108 nucleotides ECD_00293 and ECD_00294 are separated by 30 nucleotides
ECD_00291: ECD_00291 - cytosine/isoguanine deaminase, at 325,706 to 326,989
_00291
ECD_00292: ECD_00292 - transcriptional activator of cyn operon; autorepressor, at 327,326 to 328,225
_00292
ECD_00293: ECD_00293 - carbonic anhydrase, at 328,334 to 328,993
_00293
ECD_00294: ECD_00294 - cyanate aminohydrolase, at 329,024 to 329,494
_00294
Position (kb) 327
328
329 Strain fitness (log2 ratio) -1
0
1 at 326.466 kb on - strand, within ECD_00291 at 326.477 kb on + strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.747 kb on - strand, within ECD_00291 at 326.949 kb on + strand at 326.950 kb on - strand at 327.011 kb on + strand at 327.071 kb on - strand at 327.212 kb on - strand at 327.255 kb on - strand at 327.467 kb on - strand, within ECD_00292 at 327.587 kb on + strand, within ECD_00292 at 327.726 kb on - strand, within ECD_00292 at 327.923 kb on - strand, within ECD_00292 at 328.027 kb on - strand, within ECD_00292 at 328.097 kb on + strand, within ECD_00292 at 328.110 kb on - strand, within ECD_00292 at 328.295 kb on + strand at 328.295 kb on + strand at 328.295 kb on + strand at 328.345 kb on + strand at 328.346 kb on - strand at 328.361 kb on - strand at 328.402 kb on + strand, within ECD_00293 at 328.581 kb on - strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.679 kb on - strand, within ECD_00293 at 328.780 kb on - strand, within ECD_00293 at 328.807 kb on + strand, within ECD_00293 at 328.878 kb on - strand, within ECD_00293 at 328.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 326,466 - ECD_00291 0.59 -0.6 326,477 + ECD_00291 0.60 -0.2 326,478 - ECD_00291 0.60 -0.1 326,478 - ECD_00291 0.60 -0.7 326,479 + ECD_00291 0.60 +0.3 326,479 + ECD_00291 0.60 +0.5 326,747 - ECD_00291 0.81 -0.1 326,949 + +0.0 326,950 - +0.2 327,011 + +0.1 327,071 - -0.5 327,212 - +0.2 327,255 - +0.2 327,467 - ECD_00292 0.16 -0.2 327,587 + ECD_00292 0.29 +0.0 327,726 - ECD_00292 0.44 +0.9 327,923 - ECD_00292 0.66 +0.4 328,027 - ECD_00292 0.78 -0.1 328,097 + ECD_00292 0.86 +1.5 328,110 - ECD_00292 0.87 +0.2 328,295 + -0.3 328,295 + -0.2 328,295 + +0.3 328,345 + +0.4 328,346 - +0.2 328,361 - -0.1 328,402 + ECD_00293 0.10 -1.2 328,581 - ECD_00293 0.37 -0.3 328,678 + ECD_00293 0.52 -0.4 328,678 + ECD_00293 0.52 +0.2 328,679 - ECD_00293 0.52 -0.2 328,780 - ECD_00293 0.68 +0.3 328,807 + ECD_00293 0.72 +0.5 328,878 - ECD_00293 0.82 +0.4 328,998 - -0.1
Or see this region's nucleotide sequence