Strain Fitness in Escherichia coli BL21 around ECD_00243

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00241 and ECD_00242 overlap by 22 nucleotidesECD_00242 and ECD_00243 are separated by 9 nucleotidesECD_00243 and ECD_00244 overlap by 4 nucleotidesECD_00244 and ECD_00245 overlap by 4 nucleotides ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978 _00241 ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913 _00242 ECD_00243: ECD_00243 - PaoABC aldehyde oxidoreductase, Moco-containing subunit, at 268,923 to 271,121 _00243 ECD_00244: ECD_00244 - PaoABC aldehyde oxidoreductase, FAD-containing subunit, at 271,118 to 272,074 _00244 ECD_00245: ECD_00245 - PaoABC aldehyde oxidoreductase, 2Fe-2S subunit, at 272,071 to 272,760 _00245 Position (kb) 268 269 270 271 272Strain fitness (log2 ratio) -1 0 1 2at 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.040 kb on + strandat 268.174 kb on + strand, within ECD_00242at 268.301 kb on + strand, within ECD_00242at 268.312 kb on + strand, within ECD_00242at 269.003 kb on - strandat 269.003 kb on - strandat 269.229 kb on - strand, within ECD_00243at 269.229 kb on - strand, within ECD_00243at 269.229 kb on - strand, within ECD_00243at 269.451 kb on + strand, within ECD_00243at 269.451 kb on + strand, within ECD_00243at 269.451 kb on + strand, within ECD_00243at 269.451 kb on + strand, within ECD_00243at 269.451 kb on + strand, within ECD_00243at 269.452 kb on - strand, within ECD_00243at 269.452 kb on - strand, within ECD_00243at 269.583 kb on - strand, within ECD_00243at 269.583 kb on - strand, within ECD_00243at 269.705 kb on - strand, within ECD_00243at 269.705 kb on - strand, within ECD_00243at 270.143 kb on - strand, within ECD_00243at 270.218 kb on + strand, within ECD_00243at 270.218 kb on + strand, within ECD_00243at 270.219 kb on - strand, within ECD_00243at 270.219 kb on - strand, within ECD_00243at 270.299 kb on + strand, within ECD_00243at 270.324 kb on - strand, within ECD_00243at 270.412 kb on + strand, within ECD_00243at 270.413 kb on - strand, within ECD_00243at 270.515 kb on + strand, within ECD_00243at 270.515 kb on + strand, within ECD_00243at 270.515 kb on + strand, within ECD_00243at 270.516 kb on - strand, within ECD_00243at 270.516 kb on - strand, within ECD_00243at 270.516 kb on - strand, within ECD_00243at 270.516 kb on - strand, within ECD_00243at 270.516 kb on - strand, within ECD_00243at 270.583 kb on + strand, within ECD_00243at 270.584 kb on - strand, within ECD_00243at 270.584 kb on - strand, within ECD_00243at 270.587 kb on + strand, within ECD_00243at 270.588 kb on - strand, within ECD_00243at 270.711 kb on - strand, within ECD_00243at 270.799 kb on + strand, within ECD_00243at 270.799 kb on + strand, within ECD_00243at 270.967 kb on + strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.968 kb on - strandat 270.973 kb on + strandat 271.012 kb on + strandat 271.058 kb on - strandat 271.285 kb on + strand, within ECD_00244at 271.286 kb on - strand, within ECD_00244at 271.292 kb on + strand, within ECD_00244at 271.334 kb on - strand, within ECD_00244at 271.388 kb on - strand, within ECD_00244at 271.388 kb on - strand, within ECD_00244at 271.393 kb on - strand, within ECD_00244at 271.393 kb on - strand, within ECD_00244at 271.396 kb on + strand, within ECD_00244at 271.396 kb on + strand, within ECD_00244at 271.397 kb on - strand, within ECD_00244at 271.397 kb on - strand, within ECD_00244at 271.707 kb on + strand, within ECD_00244at 271.763 kb on - strand, within ECD_00244at 271.766 kb on + strand, within ECD_00244at 271.766 kb on + strand, within ECD_00244at 272.059 kb on - strandat 272.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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268,003 - -0.2
268,003 - -0.4
268,003 - -1.1
268,003 - +0.1
268,040 + -0.3
268,174 + ECD_00242 0.23 -0.2
268,301 + ECD_00242 0.36 -0.4
268,312 + ECD_00242 0.37 -1.2
269,003 - -0.3
269,003 - -0.1
269,229 - ECD_00243 0.14 -0.9
269,229 - ECD_00243 0.14 +0.2
269,229 - ECD_00243 0.14 +0.2
269,451 + ECD_00243 0.24 +0.7
269,451 + ECD_00243 0.24 +0.2
269,451 + ECD_00243 0.24 -0.2
269,451 + ECD_00243 0.24 +0.5
269,451 + ECD_00243 0.24 -0.3
269,452 - ECD_00243 0.24 +1.2
269,452 - ECD_00243 0.24 -0.7
269,583 - ECD_00243 0.30 +0.1
269,583 - ECD_00243 0.30 +0.0
269,705 - ECD_00243 0.36 -0.0
269,705 - ECD_00243 0.36 +0.8
270,143 - ECD_00243 0.55 -0.5
270,218 + ECD_00243 0.59 +0.1
270,218 + ECD_00243 0.59 +0.5
270,219 - ECD_00243 0.59 +0.5
270,219 - ECD_00243 0.59 +1.1
270,299 + ECD_00243 0.63 -0.0
270,324 - ECD_00243 0.64 -0.4
270,412 + ECD_00243 0.68 +0.5
270,413 - ECD_00243 0.68 +0.5
270,515 + ECD_00243 0.72 +0.8
270,515 + ECD_00243 0.72 -0.0
270,515 + ECD_00243 0.72 -0.2
270,516 - ECD_00243 0.72 -0.4
270,516 - ECD_00243 0.72 +0.5
270,516 - ECD_00243 0.72 +1.5
270,516 - ECD_00243 0.72 +0.6
270,516 - ECD_00243 0.72 +0.0
270,583 + ECD_00243 0.75 +0.3
270,584 - ECD_00243 0.76 +0.2
270,584 - ECD_00243 0.76 +0.1
270,587 + ECD_00243 0.76 +1.8
270,588 - ECD_00243 0.76 +0.1
270,711 - ECD_00243 0.81 -0.7
270,799 + ECD_00243 0.85 +0.5
270,799 + ECD_00243 0.85 -0.0
270,967 + -0.2
270,968 - +0.1
270,968 - -0.4
270,968 - +0.4
270,968 - +0.4
270,968 - +0.1
270,968 - -0.8
270,968 - -0.0
270,968 - +0.4
270,973 + +1.0
271,012 + +0.2
271,058 - -0.3
271,285 + ECD_00244 0.17 +0.6
271,286 - ECD_00244 0.18 +0.8
271,292 + ECD_00244 0.18 +0.4
271,334 - ECD_00244 0.23 -0.1
271,388 - ECD_00244 0.28 +0.5
271,388 - ECD_00244 0.28 -1.1
271,393 - ECD_00244 0.29 -0.0
271,393 - ECD_00244 0.29 +0.1
271,396 + ECD_00244 0.29 -1.5
271,396 + ECD_00244 0.29 -0.1
271,397 - ECD_00244 0.29 -0.5
271,397 - ECD_00244 0.29 -0.8
271,707 + ECD_00244 0.62 +0.4
271,763 - ECD_00244 0.67 -0.8
271,766 + ECD_00244 0.68 -0.1
271,766 + ECD_00244 0.68 +0.4
272,059 - -0.5
272,119 - +0.4

Or see this region's nucleotide sequence