Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00240 and ECD_t00005 are separated by 114 nucleotides ECD_t00005 and ECD_00241 are separated by 126 nucleotides ECD_00241 and ECD_00242 overlap by 22 nucleotides ECD_00242 and ECD_00243 are separated by 9 nucleotides
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441
_t00005
ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978
_00241
ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913
_00242
ECD_00243: ECD_00243 - PaoABC aldehyde oxidoreductase, Moco-containing subunit, at 268,923 to 271,121
_00243
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 267.090 kb on + strand, within ECD_00240 at 267.113 kb on + strand, within ECD_00240 at 267.210 kb on + strand at 267.210 kb on + strand at 267.210 kb on + strand at 267.211 kb on - strand at 267.211 kb on - strand at 267.234 kb on + strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.253 kb on + strand at 267.253 kb on + strand at 267.373 kb on + strand at 267.373 kb on + strand at 267.444 kb on + strand at 267.453 kb on + strand at 267.469 kb on - strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.511 kb on - strand at 267.511 kb on - strand at 267.651 kb on - strand, within ECD_00241 at 267.657 kb on - strand, within ECD_00241 at 267.697 kb on + strand, within ECD_00241 at 267.718 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.903 kb on + strand, within ECD_00241 at 267.904 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.040 kb on + strand at 268.174 kb on + strand, within ECD_00242 at 268.301 kb on + strand, within ECD_00242 at 268.312 kb on + strand, within ECD_00242 at 269.003 kb on - strand at 269.003 kb on - strand at 269.229 kb on - strand, within ECD_00243 at 269.229 kb on - strand, within ECD_00243 at 269.229 kb on - strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.452 kb on - strand, within ECD_00243 at 269.452 kb on - strand, within ECD_00243 at 269.583 kb on - strand, within ECD_00243 at 269.583 kb on - strand, within ECD_00243 at 269.705 kb on - strand, within ECD_00243 at 269.705 kb on - strand, within ECD_00243
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 267,090 + ECD_00240 0.87 -0.3 267,113 + ECD_00240 0.89 -2.2 267,210 + -1.8 267,210 + -2.7 267,210 + -1.4 267,211 - -2.4 267,211 - -2.0 267,234 + -0.0 267,250 - -0.1 267,250 - +0.5 267,253 + +0.1 267,253 + +0.7 267,373 + +0.0 267,373 + +0.1 267,444 + -0.1 267,453 + -0.4 267,469 - -0.6 267,510 + -0.4 267,510 + -0.8 267,510 + -0.4 267,511 - +0.3 267,511 - -0.6 267,651 - ECD_00241 0.20 +1.1 267,657 - ECD_00241 0.22 +0.1 267,697 + ECD_00241 0.31 +0.2 267,718 - ECD_00241 0.36 -0.2 267,720 - ECD_00241 0.37 +0.0 267,720 - ECD_00241 0.37 -0.0 267,720 - ECD_00241 0.37 +0.1 267,805 - ECD_00241 0.58 -0.2 267,805 - ECD_00241 0.58 +0.7 267,903 + ECD_00241 0.82 +0.1 267,904 - ECD_00241 0.82 -0.1 267,910 - ECD_00241 0.83 +0.1 267,910 - ECD_00241 0.83 +1.2 267,910 - ECD_00241 0.83 +0.2 268,003 - -0.2 268,003 - -0.4 268,003 - -1.1 268,003 - +0.1 268,040 + -0.3 268,174 + ECD_00242 0.23 -0.2 268,301 + ECD_00242 0.36 -0.4 268,312 + ECD_00242 0.37 -1.2 269,003 - -0.3 269,003 - -0.1 269,229 - ECD_00243 0.14 -0.9 269,229 - ECD_00243 0.14 +0.2 269,229 - ECD_00243 0.14 +0.2 269,451 + ECD_00243 0.24 +0.7 269,451 + ECD_00243 0.24 +0.2 269,451 + ECD_00243 0.24 -0.2 269,451 + ECD_00243 0.24 +0.5 269,451 + ECD_00243 0.24 -0.3 269,452 - ECD_00243 0.24 +1.2 269,452 - ECD_00243 0.24 -0.7 269,583 - ECD_00243 0.30 +0.1 269,583 - ECD_00243 0.30 +0.0 269,705 - ECD_00243 0.36 -0.0 269,705 - ECD_00243 0.36 +0.8
Or see this region's nucleotide sequence