Strain Fitness in Escherichia coli BL21 around ECD_00241

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00240 and ECD_t00005 are separated by 114 nucleotidesECD_t00005 and ECD_00241 are separated by 126 nucleotidesECD_00241 and ECD_00242 overlap by 22 nucleotidesECD_00242 and ECD_00243 are separated by 9 nucleotides ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251 _00240 ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441 _t00005 ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978 _00241 ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913 _00242 ECD_00243: ECD_00243 - PaoABC aldehyde oxidoreductase, Moco-containing subunit, at 268,923 to 271,121 _00243 Position (kb) 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1at 266.570 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.574 kb on + strand, within ECD_00240at 266.662 kb on + strand, within ECD_00240at 266.668 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.679 kb on + strand, within ECD_00240at 266.713 kb on + strand, within ECD_00240at 266.713 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.756 kb on + strand, within ECD_00240at 266.757 kb on - strand, within ECD_00240at 266.760 kb on - strand, within ECD_00240at 266.816 kb on - strand, within ECD_00240at 266.848 kb on + strand, within ECD_00240at 267.090 kb on + strand, within ECD_00240at 267.113 kb on + strand, within ECD_00240at 267.210 kb on + strandat 267.210 kb on + strandat 267.210 kb on + strandat 267.211 kb on - strandat 267.211 kb on - strandat 267.234 kb on + strandat 267.250 kb on - strandat 267.250 kb on - strandat 267.253 kb on + strandat 267.253 kb on + strandat 267.373 kb on + strandat 267.373 kb on + strandat 267.444 kb on + strandat 267.453 kb on + strandat 267.469 kb on - strandat 267.510 kb on + strandat 267.510 kb on + strandat 267.510 kb on + strandat 267.511 kb on - strandat 267.511 kb on - strandat 267.651 kb on - strand, within ECD_00241at 267.657 kb on - strand, within ECD_00241at 267.697 kb on + strand, within ECD_00241at 267.718 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.720 kb on - strand, within ECD_00241at 267.805 kb on - strand, within ECD_00241at 267.805 kb on - strand, within ECD_00241at 267.903 kb on + strand, within ECD_00241at 267.904 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 267.910 kb on - strand, within ECD_00241at 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.003 kb on - strandat 268.040 kb on + strandat 268.174 kb on + strand, within ECD_00242at 268.301 kb on + strand, within ECD_00242at 268.312 kb on + strand, within ECD_00242

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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266,570 + ECD_00240 0.46 -1.1
266,574 + ECD_00240 0.46 -1.0
266,574 + ECD_00240 0.46 -1.9
266,574 + ECD_00240 0.46 -1.0
266,574 + ECD_00240 0.46 -0.2
266,662 + ECD_00240 0.53 -1.2
266,668 + ECD_00240 0.53 -3.1
266,679 + ECD_00240 0.54 -0.6
266,679 + ECD_00240 0.54 -0.7
266,679 + ECD_00240 0.54 -2.2
266,713 + ECD_00240 0.57 -0.2
266,713 + ECD_00240 0.57 -1.5
266,756 + ECD_00240 0.60 -1.2
266,756 + ECD_00240 0.60 -1.2
266,756 + ECD_00240 0.60 -1.1
266,756 + ECD_00240 0.60 -0.8
266,756 + ECD_00240 0.60 +0.1
266,757 - ECD_00240 0.61 -0.3
266,760 - ECD_00240 0.61 -2.3
266,816 - ECD_00240 0.65 -0.2
266,848 + ECD_00240 0.68 -1.4
267,090 + ECD_00240 0.87 -0.3
267,113 + ECD_00240 0.89 -2.2
267,210 + -1.8
267,210 + -2.7
267,210 + -1.4
267,211 - -2.4
267,211 - -2.0
267,234 + -0.0
267,250 - -0.1
267,250 - +0.5
267,253 + +0.1
267,253 + +0.7
267,373 + +0.0
267,373 + +0.1
267,444 + -0.1
267,453 + -0.4
267,469 - -0.6
267,510 + -0.4
267,510 + -0.8
267,510 + -0.4
267,511 - +0.3
267,511 - -0.6
267,651 - ECD_00241 0.20 +1.1
267,657 - ECD_00241 0.22 +0.1
267,697 + ECD_00241 0.31 +0.2
267,718 - ECD_00241 0.36 -0.2
267,720 - ECD_00241 0.37 +0.0
267,720 - ECD_00241 0.37 -0.0
267,720 - ECD_00241 0.37 +0.1
267,805 - ECD_00241 0.58 -0.2
267,805 - ECD_00241 0.58 +0.7
267,903 + ECD_00241 0.82 +0.1
267,904 - ECD_00241 0.82 -0.1
267,910 - ECD_00241 0.83 +0.1
267,910 - ECD_00241 0.83 +1.2
267,910 - ECD_00241 0.83 +0.2
268,003 - -0.2
268,003 - -0.4
268,003 - -1.1
268,003 - +0.1
268,040 + -0.3
268,174 + ECD_00242 0.23 -0.2
268,301 + ECD_00242 0.36 -0.4
268,312 + ECD_00242 0.37 -1.2

Or see this region's nucleotide sequence