Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00192 and ECD_00193 are separated by 52 nucleotides ECD_00193 and ECD_00194 are separated by 110 nucleotides ECD_00194 and ECD_00195 overlap by 4 nucleotides
ECD_00192: ECD_00192 - putative lipoprotein, at 219,022 to 219,846
_00192
ECD_00193: ECD_00193 - prolyl-tRNA synthetase, at 219,899 to 221,617
_00193
ECD_00194: ECD_00194 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase, SAM-dependent, at 221,728 to 222,435
_00194
ECD_00195: ECD_00195 - putative outer membrane protein, at 222,432 to 222,836
_00195
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -1
0
1 at 218.969 kb on + strand at 218.970 kb on - strand at 218.978 kb on + strand at 218.978 kb on + strand at 218.993 kb on - strand at 219.015 kb on + strand at 219.016 kb on - strand at 219.059 kb on + strand at 219.059 kb on + strand at 219.060 kb on - strand at 219.086 kb on + strand at 219.087 kb on - strand at 219.135 kb on + strand, within ECD_00192 at 219.135 kb on + strand, within ECD_00192 at 219.136 kb on - strand, within ECD_00192 at 219.180 kb on + strand, within ECD_00192 at 219.381 kb on - strand, within ECD_00192 at 219.384 kb on + strand, within ECD_00192 at 219.394 kb on - strand, within ECD_00192 at 219.480 kb on + strand, within ECD_00192 at 219.743 kb on - strand, within ECD_00192 at 219.774 kb on + strand at 219.778 kb on + strand at 219.778 kb on + strand at 221.982 kb on - strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.024 kb on - strand, within ECD_00194 at 222.132 kb on + strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.311 kb on + strand, within ECD_00194 at 222.409 kb on + strand at 222.464 kb on + strand at 222.468 kb on + strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.515 kb on + strand, within ECD_00195 at 222.569 kb on + strand, within ECD_00195
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 218,969 + -0.9 218,970 - -0.6 218,978 + -0.4 218,978 + -0.4 218,993 - -0.7 219,015 + -0.0 219,016 - +0.4 219,059 + -0.2 219,059 + +1.0 219,060 - +0.0 219,086 + -0.7 219,087 - +0.0 219,135 + ECD_00192 0.14 +0.1 219,135 + ECD_00192 0.14 +0.4 219,136 - ECD_00192 0.14 +0.3 219,180 + ECD_00192 0.19 +0.4 219,381 - ECD_00192 0.44 -0.3 219,384 + ECD_00192 0.44 +0.1 219,394 - ECD_00192 0.45 +1.3 219,480 + ECD_00192 0.56 -0.2 219,743 - ECD_00192 0.87 +0.4 219,774 + +0.2 219,778 + -0.5 219,778 + +0.6 221,982 - ECD_00194 0.36 +0.8 222,023 + ECD_00194 0.42 -0.1 222,023 + ECD_00194 0.42 +0.0 222,024 - ECD_00194 0.42 -0.3 222,132 + ECD_00194 0.57 -0.8 222,133 - ECD_00194 0.57 +0.1 222,133 - ECD_00194 0.57 +0.2 222,311 + ECD_00194 0.82 -0.9 222,409 + +0.7 222,464 + +0.1 222,468 + -0.0 222,469 - +0.2 222,469 - -0.2 222,469 - -0.1 222,469 - +0.8 222,515 + ECD_00195 0.20 -0.1 222,569 + ECD_00195 0.34 +0.9
Or see this region's nucleotide sequence