Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00114 and ECD_00115 are separated by 324 nucleotides ECD_00115 and ECD_00116 are separated by 70 nucleotides
ECD_00114: ECD_00114 - pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2, at 128,500 to 130,392
_00114
ECD_00115: ECD_00115 - dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase, at 130,717 to 132,141
_00115
ECD_00116: ECD_00116 - DUF3300 family protein, at 132,212 to 134,065
_00116
Position (kb) 130
131
132
133 Strain fitness (log2 ratio) -1
0
1 at 130.391 kb on - strand at 132.140 kb on - strand at 132.170 kb on + strand at 132.170 kb on + strand at 132.293 kb on - strand at 132.298 kb on + strand at 132.739 kb on - strand, within ECD_00116 at 132.748 kb on - strand, within ECD_00116 at 132.763 kb on + strand, within ECD_00116 at 132.951 kb on + strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.995 kb on - strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.114 kb on - strand, within ECD_00116
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 130,391 - -1.3 132,140 - -0.2 132,170 + -0.8 132,170 + +0.0 132,293 - -0.3 132,298 + -0.2 132,739 - ECD_00116 0.28 -0.4 132,748 - ECD_00116 0.29 -0.1 132,763 + ECD_00116 0.30 -0.0 132,951 + ECD_00116 0.40 +1.0 132,970 - ECD_00116 0.41 -0.2 132,970 - ECD_00116 0.41 +0.6 132,995 - ECD_00116 0.42 +0.8 133,006 + ECD_00116 0.43 +0.5 133,006 + ECD_00116 0.43 +0.7 133,113 + ECD_00116 0.49 +0.7 133,113 + ECD_00116 0.49 +1.4 133,114 - ECD_00116 0.49 +0.3
Or see this region's nucleotide sequence