Strain Fitness in Escherichia coli BL21 around ECD_00079

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00078 and ECD_00079 are separated by 317 nucleotidesECD_00079 and ECD_00080 are separated by 2 nucleotidesECD_00080 and ECD_00081 are separated by 179 nucleotides ECD_00078: ECD_00078 - global transcription factor, at 87,173 to 88,117 _00078 ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159 _00079 ECD_00080: ECD_00080 - acetolactate synthase 3, small subunit, valine-sensitive, at 90,162 to 90,653 _00080 ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837 _00081 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 87.459 kb on + strand, within ECD_00078at 87.566 kb on - strand, within ECD_00078at 87.594 kb on + strand, within ECD_00078at 87.594 kb on + strand, within ECD_00078at 87.595 kb on - strand, within ECD_00078at 87.601 kb on + strand, within ECD_00078at 87.601 kb on + strand, within ECD_00078at 87.708 kb on + strand, within ECD_00078at 87.763 kb on + strand, within ECD_00078at 87.861 kb on + strand, within ECD_00078at 87.862 kb on - strand, within ECD_00078at 87.862 kb on - strand, within ECD_00078at 87.909 kb on + strand, within ECD_00078at 87.909 kb on + strand, within ECD_00078at 87.910 kb on - strand, within ECD_00078at 87.913 kb on + strand, within ECD_00078at 87.913 kb on + strand, within ECD_00078at 87.943 kb on + strand, within ECD_00078at 87.984 kb on + strand, within ECD_00078at 87.996 kb on + strand, within ECD_00078at 87.997 kb on - strand, within ECD_00078at 87.997 kb on - strand, within ECD_00078at 88.095 kb on + strandat 88.096 kb on - strandat 88.116 kb on - strandat 88.350 kb on + strandat 88.531 kb on - strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.549 kb on - strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.572 kb on - strandat 88.572 kb on - strandat 88.572 kb on - strandat 88.602 kb on + strandat 88.603 kb on - strandat 88.703 kb on - strand, within ECD_00079at 88.704 kb on + strand, within ECD_00079at 88.704 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.742 kb on + strand, within ECD_00079at 88.757 kb on + strand, within ECD_00079at 88.763 kb on - strand, within ECD_00079at 88.954 kb on + strand, within ECD_00079at 88.977 kb on + strand, within ECD_00079at 88.987 kb on + strand, within ECD_00079at 88.987 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.022 kb on + strand, within ECD_00079at 89.069 kb on - strand, within ECD_00079at 89.073 kb on - strand, within ECD_00079at 89.224 kb on + strand, within ECD_00079at 89.224 kb on + strand, within ECD_00079at 89.225 kb on - strand, within ECD_00079at 89.236 kb on - strand, within ECD_00079at 89.314 kb on + strand, within ECD_00079at 89.315 kb on - strand, within ECD_00079at 89.355 kb on + strand, within ECD_00079at 89.367 kb on + strand, within ECD_00079at 89.528 kb on - strand, within ECD_00079at 89.602 kb on + strand, within ECD_00079at 89.602 kb on + strand, within ECD_00079at 89.603 kb on - strand, within ECD_00079at 89.647 kb on + strand, within ECD_00079at 89.714 kb on + strand, within ECD_00079at 89.785 kb on - strand, within ECD_00079at 89.785 kb on - strand, within ECD_00079at 89.900 kb on - strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 90.019 kb on - strandat 90.046 kb on - strandat 90.095 kb on - strandat 90.162 kb on - strandat 90.184 kb on + strandat 90.296 kb on + strand, within ECD_00080at 90.328 kb on + strand, within ECD_00080at 90.352 kb on + strand, within ECD_00080at 90.471 kb on - strand, within ECD_00080at 90.473 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.522 kb on - strand, within ECD_00080at 90.532 kb on + strand, within ECD_00080at 90.764 kb on - strandat 90.770 kb on + strandat 90.817 kb on + strandat 90.887 kb on + strandat 90.888 kb on - strandat 90.888 kb on - strandat 90.888 kb on - strandat 91.021 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.076 kb on + strand, within ECD_00081at 91.077 kb on - strand, within ECD_00081

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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87,459 + ECD_00078 0.30 +0.0
87,566 - ECD_00078 0.42 -0.3
87,594 + ECD_00078 0.45 -0.5
87,594 + ECD_00078 0.45 +0.1
87,595 - ECD_00078 0.45 +0.1
87,601 + ECD_00078 0.45 +0.3
87,601 + ECD_00078 0.45 -0.1
87,708 + ECD_00078 0.57 +0.3
87,763 + ECD_00078 0.62 +0.4
87,861 + ECD_00078 0.73 +0.1
87,862 - ECD_00078 0.73 -0.2
87,862 - ECD_00078 0.73 +0.4
87,909 + ECD_00078 0.78 +0.1
87,909 + ECD_00078 0.78 +0.9
87,910 - ECD_00078 0.78 -0.2
87,913 + ECD_00078 0.78 -1.8
87,913 + ECD_00078 0.78 +0.3
87,943 + ECD_00078 0.81 -0.4
87,984 + ECD_00078 0.86 +0.2
87,996 + ECD_00078 0.87 +0.2
87,997 - ECD_00078 0.87 -0.2
87,997 - ECD_00078 0.87 +0.2
88,095 + +0.3
88,096 - +0.5
88,116 - -0.4
88,350 + +0.6
88,531 - +1.1
88,534 + -0.5
88,534 + +0.0
88,549 - +0.1
88,571 + -0.2
88,571 + +0.1
88,571 + +0.2
88,571 + -0.4
88,571 + +0.4
88,572 - +0.3
88,572 - +0.9
88,572 - -0.0
88,602 + +0.5
88,603 - +0.0
88,703 - ECD_00079 0.16 +1.1
88,704 + ECD_00079 0.16 +0.3
88,704 + ECD_00079 0.16 +0.5
88,721 + ECD_00079 0.17 +1.0
88,721 + ECD_00079 0.17 +0.4
88,721 + ECD_00079 0.17 +0.3
88,721 + ECD_00079 0.17 +0.3
88,721 + ECD_00079 0.17 -0.2
88,742 + ECD_00079 0.18 +0.2
88,757 + ECD_00079 0.19 -0.1
88,763 - ECD_00079 0.19 +0.1
88,954 + ECD_00079 0.30 +0.1
88,977 + ECD_00079 0.31 +0.3
88,987 + ECD_00079 0.32 +0.2
88,987 + ECD_00079 0.32 +0.5
89,010 + ECD_00079 0.33 -0.2
89,010 + ECD_00079 0.33 -0.5
89,010 + ECD_00079 0.33 -0.3
89,022 + ECD_00079 0.34 -0.3
89,069 - ECD_00079 0.37 +1.5
89,073 - ECD_00079 0.37 -0.0
89,224 + ECD_00079 0.46 -0.2
89,224 + ECD_00079 0.46 -0.6
89,225 - ECD_00079 0.46 +0.0
89,236 - ECD_00079 0.46 +0.3
89,314 + ECD_00079 0.51 +0.2
89,315 - ECD_00079 0.51 -0.2
89,355 + ECD_00079 0.53 -0.7
89,367 + ECD_00079 0.54 -0.1
89,528 - ECD_00079 0.63 -0.5
89,602 + ECD_00079 0.68 -0.2
89,602 + ECD_00079 0.68 +0.2
89,603 - ECD_00079 0.68 -0.5
89,647 + ECD_00079 0.70 -0.3
89,714 + ECD_00079 0.74 -0.3
89,785 - ECD_00079 0.78 -0.0
89,785 - ECD_00079 0.78 +0.5
89,900 - ECD_00079 0.85 -1.2
89,923 + ECD_00079 0.86 -0.1
89,923 + ECD_00079 0.86 +0.5
89,923 + ECD_00079 0.86 -0.2
89,923 + ECD_00079 0.86 +0.1
89,923 + ECD_00079 0.86 -0.1
89,923 + ECD_00079 0.86 +0.0
89,923 + ECD_00079 0.86 +0.4
89,923 + ECD_00079 0.86 +0.1
89,924 - ECD_00079 0.86 +0.7
89,924 - ECD_00079 0.86 +0.8
89,924 - ECD_00079 0.86 +0.6
89,925 + ECD_00079 0.86 +0.1
89,925 + ECD_00079 0.86 +0.0
89,925 + ECD_00079 0.86 +0.3
89,926 - ECD_00079 0.86 +0.1
89,926 - ECD_00079 0.86 -0.5
89,926 - ECD_00079 0.86 +0.4
89,966 - ECD_00079 0.89 +0.3
89,966 - ECD_00079 0.89 -0.9
90,019 - -0.1
90,046 - -0.1
90,095 - +1.4
90,162 - +0.5
90,184 + +0.5
90,296 + ECD_00080 0.27 -0.1
90,328 + ECD_00080 0.34 -0.8
90,352 + ECD_00080 0.39 +1.0
90,471 - ECD_00080 0.63 +0.7
90,473 + ECD_00080 0.63 -0.5
90,497 + ECD_00080 0.68 +0.3
90,497 + ECD_00080 0.68 +0.1
90,522 - ECD_00080 0.73 +0.3
90,532 + ECD_00080 0.75 -0.1
90,764 - -0.2
90,770 + -0.5
90,817 + +0.1
90,887 + -1.9
90,888 - -1.0
90,888 - -0.6
90,888 - -0.4
91,021 + ECD_00081 0.19 -1.7
91,058 + ECD_00081 0.22 -0.7
91,058 + ECD_00081 0.22 -1.9
91,058 + ECD_00081 0.22 -1.6
91,076 + ECD_00081 0.24 -0.5
91,077 - ECD_00081 0.24 -1.5

Or see this region's nucleotide sequence