Strain Fitness in Escherichia coli BL21 around ECD_00078

Experiment: Mixed culture, Halobacteriovorax-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00076 and ECD_00077 are separated by 92 nucleotidesECD_00077 and ECD_00078 are separated by 659 nucleotidesECD_00078 and ECD_00079 are separated by 317 nucleotides ECD_00076: ECD_00076 - 2-isopropylmalate synthase, at 84,763 to 86,334 _00076 ECD_00077: ECD_00077 - leu operon leader peptide, at 86,427 to 86,513 _00077 ECD_00078: ECD_00078 - global transcription factor, at 87,173 to 88,117 _00078 ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159 _00079 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1at 86.224 kb on - strandat 86.378 kb on - strandat 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.485 kb on - strand, within ECD_00077at 86.485 kb on - strand, within ECD_00077at 86.632 kb on + strandat 86.980 kb on + strandat 87.150 kb on + strandat 87.168 kb on + strandat 87.168 kb on + strandat 87.172 kb on + strandat 87.249 kb on + strandat 87.249 kb on + strandat 87.250 kb on - strandat 87.250 kb on - strandat 87.398 kb on - strand, within ECD_00078at 87.459 kb on + strand, within ECD_00078at 87.566 kb on - strand, within ECD_00078at 87.594 kb on + strand, within ECD_00078at 87.594 kb on + strand, within ECD_00078at 87.595 kb on - strand, within ECD_00078at 87.601 kb on + strand, within ECD_00078at 87.601 kb on + strand, within ECD_00078at 87.708 kb on + strand, within ECD_00078at 87.763 kb on + strand, within ECD_00078at 87.861 kb on + strand, within ECD_00078at 87.862 kb on - strand, within ECD_00078at 87.862 kb on - strand, within ECD_00078at 87.909 kb on + strand, within ECD_00078at 87.909 kb on + strand, within ECD_00078at 87.910 kb on - strand, within ECD_00078at 87.913 kb on + strand, within ECD_00078at 87.913 kb on + strand, within ECD_00078at 87.943 kb on + strand, within ECD_00078at 87.984 kb on + strand, within ECD_00078at 87.996 kb on + strand, within ECD_00078at 87.997 kb on - strand, within ECD_00078at 87.997 kb on - strand, within ECD_00078at 88.095 kb on + strandat 88.096 kb on - strandat 88.116 kb on - strandat 88.350 kb on + strandat 88.531 kb on - strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.549 kb on - strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.571 kb on + strandat 88.572 kb on - strandat 88.572 kb on - strandat 88.572 kb on - strandat 88.602 kb on + strandat 88.603 kb on - strandat 88.703 kb on - strand, within ECD_00079at 88.704 kb on + strand, within ECD_00079at 88.704 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.721 kb on + strand, within ECD_00079at 88.742 kb on + strand, within ECD_00079at 88.757 kb on + strand, within ECD_00079at 88.763 kb on - strand, within ECD_00079at 88.954 kb on + strand, within ECD_00079at 88.977 kb on + strand, within ECD_00079at 88.987 kb on + strand, within ECD_00079at 88.987 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.010 kb on + strand, within ECD_00079at 89.022 kb on + strand, within ECD_00079at 89.069 kb on - strand, within ECD_00079at 89.073 kb on - strand, within ECD_00079

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
remove
86,224 - -0.1
86,378 - -0.2
86,482 - ECD_00077 0.63 -0.1
86,482 - ECD_00077 0.63 +0.2
86,482 - ECD_00077 0.63 +1.1
86,482 - ECD_00077 0.63 +0.1
86,482 - ECD_00077 0.63 +0.1
86,482 - ECD_00077 0.63 -0.3
86,485 - ECD_00077 0.67 -0.2
86,485 - ECD_00077 0.67 -0.2
86,632 + +0.1
86,980 + -0.2
87,150 + -0.4
87,168 + -0.2
87,168 + +0.6
87,172 + -1.0
87,249 + +0.4
87,249 + +0.1
87,250 - +0.8
87,250 - -0.7
87,398 - ECD_00078 0.24 +0.2
87,459 + ECD_00078 0.30 +0.0
87,566 - ECD_00078 0.42 -0.3
87,594 + ECD_00078 0.45 -0.5
87,594 + ECD_00078 0.45 +0.1
87,595 - ECD_00078 0.45 +0.1
87,601 + ECD_00078 0.45 +0.3
87,601 + ECD_00078 0.45 -0.1
87,708 + ECD_00078 0.57 +0.3
87,763 + ECD_00078 0.62 +0.4
87,861 + ECD_00078 0.73 +0.1
87,862 - ECD_00078 0.73 -0.2
87,862 - ECD_00078 0.73 +0.4
87,909 + ECD_00078 0.78 +0.1
87,909 + ECD_00078 0.78 +0.9
87,910 - ECD_00078 0.78 -0.2
87,913 + ECD_00078 0.78 -1.8
87,913 + ECD_00078 0.78 +0.3
87,943 + ECD_00078 0.81 -0.4
87,984 + ECD_00078 0.86 +0.2
87,996 + ECD_00078 0.87 +0.2
87,997 - ECD_00078 0.87 -0.2
87,997 - ECD_00078 0.87 +0.2
88,095 + +0.3
88,096 - +0.5
88,116 - -0.4
88,350 + +0.6
88,531 - +1.1
88,534 + -0.5
88,534 + +0.0
88,549 - +0.1
88,571 + -0.2
88,571 + +0.1
88,571 + +0.2
88,571 + -0.4
88,571 + +0.4
88,572 - +0.3
88,572 - +0.9
88,572 - -0.0
88,602 + +0.5
88,603 - +0.0
88,703 - ECD_00079 0.16 +1.1
88,704 + ECD_00079 0.16 +0.3
88,704 + ECD_00079 0.16 +0.5
88,721 + ECD_00079 0.17 +1.0
88,721 + ECD_00079 0.17 +0.4
88,721 + ECD_00079 0.17 +0.3
88,721 + ECD_00079 0.17 +0.3
88,721 + ECD_00079 0.17 -0.2
88,742 + ECD_00079 0.18 +0.2
88,757 + ECD_00079 0.19 -0.1
88,763 - ECD_00079 0.19 +0.1
88,954 + ECD_00079 0.30 +0.1
88,977 + ECD_00079 0.31 +0.3
88,987 + ECD_00079 0.32 +0.2
88,987 + ECD_00079 0.32 +0.5
89,010 + ECD_00079 0.33 -0.2
89,010 + ECD_00079 0.33 -0.5
89,010 + ECD_00079 0.33 -0.3
89,022 + ECD_00079 0.34 -0.3
89,069 - ECD_00079 0.37 +1.5
89,073 - ECD_00079 0.37 -0.0

Or see this region's nucleotide sequence