Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00054 and ECD_00055 are separated by 2 nucleotides ECD_00055 and ECD_00056 overlap by 4 nucleotides ECD_00056 and ECD_00057 overlap by 1 nucleotides
ECD_00054: ECD_00054 - protein associated with Co2+ and Mg2+ efflux, at 55,425 to 55,802
_00054
ECD_00055: ECD_00055 - 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent, at 55,805 to 56,626
_00055
ECD_00056: ECD_00056 - 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent, at 56,623 to 57,612
_00056
ECD_00057: ECD_00057 - peptidyl-prolyl cis-trans isomerase (PPIase), at 57,612 to 58,898
_00057
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.710 kb on - strand, within ECD_00054 at 55.711 kb on + strand, within ECD_00054 at 55.724 kb on - strand, within ECD_00054 at 55.778 kb on + strand at 55.779 kb on - strand at 55.839 kb on + strand at 56.743 kb on - strand, within ECD_00056 at 56.820 kb on - strand, within ECD_00056 at 56.852 kb on + strand, within ECD_00056 at 56.945 kb on - strand, within ECD_00056 at 56.945 kb on - strand, within ECD_00056 at 56.961 kb on + strand, within ECD_00056 at 57.055 kb on - strand, within ECD_00056 at 57.235 kb on - strand, within ECD_00056 at 57.246 kb on + strand, within ECD_00056 at 57.247 kb on - strand, within ECD_00056 at 57.326 kb on + strand, within ECD_00056 at 57.326 kb on + strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.373 kb on + strand, within ECD_00056 at 57.550 kb on + strand at 57.948 kb on - strand, within ECD_00057 at 58.526 kb on - strand, within ECD_00057
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 55,710 - ECD_00054 0.75 -1.8 55,711 + ECD_00054 0.76 -0.8 55,724 - ECD_00054 0.79 -0.6 55,778 + -0.8 55,779 - -0.1 55,839 + +0.0 56,743 - ECD_00056 0.12 -0.3 56,820 - ECD_00056 0.20 -1.2 56,852 + ECD_00056 0.23 -1.7 56,945 - ECD_00056 0.33 -0.5 56,945 - ECD_00056 0.33 -1.2 56,961 + ECD_00056 0.34 -0.2 57,055 - ECD_00056 0.44 -0.5 57,235 - ECD_00056 0.62 -0.6 57,246 + ECD_00056 0.63 -0.2 57,247 - ECD_00056 0.63 -0.4 57,326 + ECD_00056 0.71 -0.6 57,326 + ECD_00056 0.71 -1.8 57,327 - ECD_00056 0.71 -0.9 57,327 - ECD_00056 0.71 -0.8 57,327 - ECD_00056 0.71 -1.4 57,327 - ECD_00056 0.71 -0.6 57,327 - ECD_00056 0.71 -1.2 57,373 + ECD_00056 0.76 -0.2 57,550 + -1.1 57,948 - ECD_00057 0.26 -1.2 58,526 - ECD_00057 0.71 -2.4
Or see this region's nucleotide sequence