Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00037 and ECD_00038 are separated by 261 nucleotides ECD_00038 and ECD_00039 are separated by 208 nucleotides ECD_00039 and ECD_00040 are separated by 5 nucleotides ECD_00040 and ECD_00041 are separated by 0 nucleotides
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767
_00038
ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566
_00039
ECD_00040: ECD_00040 - carnitinyl-CoA dehydratase, at 39,572 to 40,465
_00040
ECD_00041: ECD_00041 - putative crotonobetaine/carnitine-CoA ligase, at 40,466 to 42,019
_00041
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.994 kb on + strand at 37.995 kb on - strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.997 kb on - strand at 37.997 kb on - strand at 38.109 kb on - strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.278 kb on + strand at 38.279 kb on - strand at 38.338 kb on - strand at 38.349 kb on + strand at 38.371 kb on + strand at 38.500 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.512 kb on + strand, within ECD_00038 at 38.548 kb on + strand, within ECD_00038 at 38.560 kb on + strand, within ECD_00038 at 38.561 kb on - strand, within ECD_00038 at 38.647 kb on + strand, within ECD_00038 at 38.648 kb on - strand, within ECD_00038 at 38.755 kb on + strand at 38.755 kb on + strand at 38.756 kb on - strand at 38.756 kb on - strand at 38.922 kb on + strand at 38.958 kb on - strand at 39.135 kb on - strand, within ECD_00039 at 39.145 kb on - strand, within ECD_00039 at 39.257 kb on + strand, within ECD_00039 at 39.258 kb on - strand, within ECD_00039 at 39.378 kb on - strand, within ECD_00039 at 39.460 kb on + strand, within ECD_00039 at 39.460 kb on + strand, within ECD_00039 at 39.461 kb on - strand, within ECD_00039 at 39.556 kb on + strand at 39.559 kb on + strand at 39.559 kb on + strand at 39.560 kb on - strand at 39.560 kb on - strand at 39.658 kb on - strand at 39.682 kb on + strand, within ECD_00040 at 39.684 kb on + strand, within ECD_00040 at 39.726 kb on + strand, within ECD_00040 at 39.727 kb on - strand, within ECD_00040 at 39.727 kb on - strand, within ECD_00040 at 39.767 kb on - strand, within ECD_00040 at 40.067 kb on - strand, within ECD_00040 at 40.217 kb on + strand, within ECD_00040 at 40.248 kb on - strand, within ECD_00040 at 40.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 37,994 + -1.1 37,995 - -1.2 37,996 + -2.3 37,996 + -1.5 37,996 + -1.9 37,996 + -1.7 37,996 + -2.8 37,997 - -1.3 37,997 - -1.4 38,109 - +0.1 38,237 + +0.1 38,237 + +0.7 38,237 + +0.3 38,278 + +0.4 38,279 - +0.0 38,338 - +0.3 38,349 + -0.4 38,371 + -0.2 38,500 + ECD_00038 0.32 +0.3 38,510 + ECD_00038 0.35 -0.3 38,510 + ECD_00038 0.35 -0.8 38,511 - ECD_00038 0.35 -0.6 38,511 - ECD_00038 0.35 -0.6 38,512 + ECD_00038 0.35 +0.2 38,548 + ECD_00038 0.44 -0.1 38,560 + ECD_00038 0.47 +0.2 38,561 - ECD_00038 0.48 -0.0 38,647 + ECD_00038 0.69 +0.7 38,648 - ECD_00038 0.70 +0.1 38,755 + -0.6 38,755 + +1.5 38,756 - +0.1 38,756 - -0.8 38,922 + +0.9 38,958 - -0.1 39,135 - ECD_00039 0.27 -0.4 39,145 - ECD_00039 0.29 -0.2 39,257 + ECD_00039 0.48 -0.6 39,258 - ECD_00039 0.48 -0.1 39,378 - ECD_00039 0.68 -0.6 39,460 + ECD_00039 0.82 -0.3 39,460 + ECD_00039 0.82 -1.3 39,461 - ECD_00039 0.82 -0.0 39,556 + +0.5 39,559 + +0.3 39,559 + +0.7 39,560 - +0.1 39,560 - -0.1 39,658 - +0.2 39,682 + ECD_00040 0.12 -0.4 39,684 + ECD_00040 0.13 +0.5 39,726 + ECD_00040 0.17 -0.8 39,727 - ECD_00040 0.17 +0.4 39,727 - ECD_00040 0.17 -0.2 39,767 - ECD_00040 0.22 +0.2 40,067 - ECD_00040 0.55 -0.0 40,217 + ECD_00040 0.72 -0.3 40,248 - ECD_00040 0.76 -0.1 40,468 - +0.1
Or see this region's nucleotide sequence