Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00018 and ECD_00019 are separated by 59 nucleotides ECD_00019 and ECD_00020 are separated by 38 nucleotides
ECD_00018: ECD_00018 - sodium-proton antiporter, at 17,488 to 18,654
_00018
ECD_00019: ECD_00019 - transcriptional activator of nhaA, at 18,714 to 19,619
_00019
ECD_00020: ECD_00020 - hypothetical protein, at 19,658 to 20,617
_00020
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1
2 at 17.759 kb on + strand, within ECD_00018 at 17.836 kb on + strand, within ECD_00018 at 17.995 kb on - strand, within ECD_00018 at 18.015 kb on + strand, within ECD_00018 at 18.023 kb on + strand, within ECD_00018 at 18.112 kb on - strand, within ECD_00018 at 18.195 kb on + strand, within ECD_00018 at 18.728 kb on + strand at 18.736 kb on - strand at 18.751 kb on - strand at 18.765 kb on + strand at 18.765 kb on + strand at 18.805 kb on - strand, within ECD_00019 at 18.868 kb on + strand, within ECD_00019 at 18.872 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.978 kb on + strand, within ECD_00019 at 18.997 kb on + strand, within ECD_00019 at 18.998 kb on - strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.051 kb on + strand, within ECD_00019 at 19.069 kb on + strand, within ECD_00019 at 19.132 kb on + strand, within ECD_00019 at 19.181 kb on + strand, within ECD_00019 at 19.182 kb on - strand, within ECD_00019 at 19.458 kb on + strand, within ECD_00019 at 19.654 kb on + strand at 19.660 kb on - strand at 19.660 kb on - strand at 19.715 kb on - strand at 19.722 kb on + strand at 19.959 kb on - strand, within ECD_00020 at 20.517 kb on - strand, within ECD_00020
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 17,759 + ECD_00018 0.23 +0.1 17,836 + ECD_00018 0.30 +0.8 17,995 - ECD_00018 0.43 -0.2 18,015 + ECD_00018 0.45 -0.7 18,023 + ECD_00018 0.46 -0.2 18,112 - ECD_00018 0.53 +2.1 18,195 + ECD_00018 0.61 -0.2 18,728 + +0.1 18,736 - +0.4 18,751 - +0.3 18,765 + +0.3 18,765 + +0.2 18,805 - ECD_00019 0.10 -0.1 18,868 + ECD_00019 0.17 -0.7 18,872 + ECD_00019 0.17 +0.1 18,978 + ECD_00019 0.29 +0.1 18,978 + ECD_00019 0.29 +0.9 18,997 + ECD_00019 0.31 +0.7 18,998 - ECD_00019 0.31 +0.1 19,051 + ECD_00019 0.37 -0.3 19,051 + ECD_00019 0.37 +0.7 19,051 + ECD_00019 0.37 +0.5 19,051 + ECD_00019 0.37 -0.1 19,069 + ECD_00019 0.39 +0.8 19,132 + ECD_00019 0.46 +0.0 19,181 + ECD_00019 0.52 +0.5 19,182 - ECD_00019 0.52 -0.1 19,458 + ECD_00019 0.82 +0.4 19,654 + +0.6 19,660 - +0.9 19,660 - +0.3 19,715 - -0.5 19,722 + +0.1 19,959 - ECD_00020 0.31 -0.3 20,517 - ECD_00020 0.89 -0.3
Or see this region's nucleotide sequence