Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4108

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4105 and GFF4106 overlap by 4 nucleotidesGFF4106 and GFF4107 overlap by 4 nucleotidesGFF4107 and GFF4108 are separated by 155 nucleotidesGFF4108 and GFF4109 are separated by 248 nucleotidesGFF4109 and GFF4110 are separated by 88 nucleotides GFF4105 - Protein with similarity to RtcB, at 64,484 to 65,458 GFF4105 GFF4106 - Protein with similarity to RtcB, at 65,455 to 65,616 GFF4106 GFF4107 - Peptide chain release factor homolog, at 65,613 to 66,227 GFF4107 GFF4108 - Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3), at 66,383 to 67,840 GFF4108 GFF4109 - Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22), at 68,089 to 68,547 GFF4109 GFF4110 - Fermentation/respiration switch protein, at 68,636 to 69,880 GFF4110 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 65.482 kb on + strand, within GFF4106at 65.483 kb on - strand, within GFF4106at 65.503 kb on + strand, within GFF4106at 65.503 kb on + strand, within GFF4106at 65.506 kb on - strand, within GFF4106at 65.717 kb on - strand, within GFF4107at 65.753 kb on - strand, within GFF4107at 65.753 kb on - strand, within GFF4107at 65.923 kb on + strand, within GFF4107at 65.987 kb on + strand, within GFF4107at 65.988 kb on - strand, within GFF4107at 66.201 kb on - strandat 66.249 kb on - strandat 66.286 kb on + strandat 66.310 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.453 kb on - strandat 66.709 kb on + strand, within GFF4108at 66.710 kb on - strand, within GFF4108at 66.710 kb on - strand, within GFF4108at 66.710 kb on - strand, within GFF4108at 66.994 kb on - strand, within GFF4108at 67.229 kb on - strand, within GFF4108at 67.312 kb on - strand, within GFF4108at 67.312 kb on - strand, within GFF4108at 67.450 kb on + strand, within GFF4108at 67.451 kb on - strand, within GFF4108at 67.451 kb on - strand, within GFF4108at 67.543 kb on + strand, within GFF4108at 67.543 kb on + strand, within GFF4108at 67.544 kb on - strand, within GFF4108at 67.544 kb on - strand, within GFF4108at 67.544 kb on - strand, within GFF4108at 67.544 kb on - strand, within GFF4108at 67.545 kb on + strand, within GFF4108at 67.546 kb on - strand, within GFF4108at 67.546 kb on - strand, within GFF4108at 67.546 kb on - strand, within GFF4108at 67.546 kb on - strand, within GFF4108at 67.556 kb on - strand, within GFF4108at 67.649 kb on - strand, within GFF4108at 67.704 kb on + strandat 67.705 kb on - strandat 67.778 kb on - strandat 67.778 kb on - strandat 67.843 kb on + strandat 67.843 kb on + strandat 67.843 kb on + strandat 67.844 kb on - strandat 67.911 kb on + strandat 67.911 kb on + strandat 67.911 kb on + strandat 67.955 kb on + strandat 67.958 kb on - strandat 67.958 kb on - strandat 68.034 kb on + strandat 68.034 kb on + strandat 68.035 kb on - strandat 68.035 kb on - strandat 68.276 kb on - strand, within GFF4109at 68.399 kb on - strand, within GFF4109at 68.462 kb on - strand, within GFF4109at 68.467 kb on - strand, within GFF4109at 68.602 kb on + strandat 68.602 kb on + strandat 68.617 kb on - strandat 68.698 kb on + strandat 68.788 kb on - strand, within GFF4110

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
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65,482 + GFF4106 0.17 +0.1
65,483 - GFF4106 0.17 +0.5
65,503 + GFF4106 0.30 +0.2
65,503 + GFF4106 0.30 +0.2
65,506 - GFF4106 0.31 -0.2
65,717 - GFF4107 0.17 -0.3
65,753 - GFF4107 0.23 +0.6
65,753 - GFF4107 0.23 +0.6
65,923 + GFF4107 0.50 +0.2
65,987 + GFF4107 0.61 -0.1
65,988 - GFF4107 0.61 +1.4
66,201 - +0.3
66,249 - +1.3
66,286 + +0.6
66,310 + -0.1
66,452 + -0.1
66,452 + -0.3
66,452 + -0.2
66,453 - -0.1
66,709 + GFF4108 0.22 -0.6
66,710 - GFF4108 0.22 +0.1
66,710 - GFF4108 0.22 -0.2
66,710 - GFF4108 0.22 -1.6
66,994 - GFF4108 0.42 +0.4
67,229 - GFF4108 0.58 -0.5
67,312 - GFF4108 0.64 +0.1
67,312 - GFF4108 0.64 -1.4
67,450 + GFF4108 0.73 +0.2
67,451 - GFF4108 0.73 +0.0
67,451 - GFF4108 0.73 -0.1
67,543 + GFF4108 0.80 -1.1
67,543 + GFF4108 0.80 -0.1
67,544 - GFF4108 0.80 +0.5
67,544 - GFF4108 0.80 -0.3
67,544 - GFF4108 0.80 -0.6
67,544 - GFF4108 0.80 -0.5
67,545 + GFF4108 0.80 -0.4
67,546 - GFF4108 0.80 -0.8
67,546 - GFF4108 0.80 -0.4
67,546 - GFF4108 0.80 +0.2
67,546 - GFF4108 0.80 -0.2
67,556 - GFF4108 0.80 +0.0
67,649 - GFF4108 0.87 -0.3
67,704 + -0.1
67,705 - +0.3
67,778 - -0.5
67,778 - -0.0
67,843 + -0.7
67,843 + -0.1
67,843 + -0.5
67,844 - -0.6
67,911 + -0.4
67,911 + +0.2
67,911 + -0.7
67,955 + -0.0
67,958 - -0.2
67,958 - +0.3
68,034 + +0.5
68,034 + +0.2
68,035 - +0.4
68,035 - +0.4
68,276 - GFF4109 0.41 -0.8
68,399 - GFF4109 0.68 +0.2
68,462 - GFF4109 0.81 +1.2
68,467 - GFF4109 0.82 -0.0
68,602 + -0.8
68,602 + +0.5
68,617 - +0.4
68,698 + -0.1
68,788 - GFF4110 0.12 +0.3

Or see this region's nucleotide sequence