Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3769

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3768 and GFF3769 are separated by 9 nucleotidesGFF3769 and GFF3770 are separated by 84 nucleotidesGFF3770 and GFF3771 are separated by 20 nucleotides GFF3768 - Sugar efflux transporter B, at 35,947 to 37,128 GFF3768 GFF3769 - hypothetical protein, at 37,138 to 37,260 GFF3769 GFF3770 - hypothetical protein, at 37,345 to 37,476 GFF3770 GFF3771 - Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69), at 37,497 to 38,627 GFF3771 Position (kb) 37 38Strain fitness (log2 ratio) -1 0 1at 36.176 kb on + strand, within GFF3768at 36.176 kb on + strand, within GFF3768at 36.243 kb on - strand, within GFF3768at 36.414 kb on + strand, within GFF3768at 36.425 kb on + strand, within GFF3768at 36.425 kb on + strand, within GFF3768at 36.425 kb on + strand, within GFF3768at 36.436 kb on - strand, within GFF3768at 36.436 kb on - strand, within GFF3768at 36.603 kb on - strand, within GFF3768at 36.618 kb on + strand, within GFF3768at 36.815 kb on + strand, within GFF3768at 36.815 kb on + strand, within GFF3768at 37.098 kb on + strandat 37.134 kb on + strandat 37.241 kb on - strand, within GFF3769at 37.298 kb on + strandat 37.622 kb on + strand, within GFF3771at 37.777 kb on - strand, within GFF3771at 37.790 kb on + strand, within GFF3771at 38.173 kb on + strand, within GFF3771at 38.194 kb on + strand, within GFF3771

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
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36,176 + GFF3768 0.19 +0.3
36,176 + GFF3768 0.19 +0.4
36,243 - GFF3768 0.25 +0.1
36,414 + GFF3768 0.40 -0.8
36,425 + GFF3768 0.40 +0.1
36,425 + GFF3768 0.40 +0.1
36,425 + GFF3768 0.40 -0.1
36,436 - GFF3768 0.41 -0.5
36,436 - GFF3768 0.41 -0.8
36,603 - GFF3768 0.55 -0.0
36,618 + GFF3768 0.57 -0.2
36,815 + GFF3768 0.73 +0.4
36,815 + GFF3768 0.73 +0.9
37,098 + +0.2
37,134 + +0.1
37,241 - GFF3769 0.84 +0.5
37,298 + -0.4
37,622 + GFF3771 0.11 -0.9
37,777 - GFF3771 0.25 +0.2
37,790 + GFF3771 0.26 -0.0
38,173 + GFF3771 0.60 +0.1
38,194 + GFF3771 0.62 +0.1

Or see this region's nucleotide sequence