Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3105

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3102 and GFF3103 overlap by 8 nucleotidesGFF3103 and GFF3104 overlap by 8 nucleotidesGFF3104 and GFF3105 overlap by 1 nucleotidesGFF3105 and GFF3106 overlap by 4 nucleotides GFF3102 - [NiFe] hydrogenase nickel incorporation protein HybF, at 112,613 to 112,954 GFF3102 GFF3103 - Hydrogenase-2 operon protein hybE, at 112,947 to 113,435 GFF3103 GFF3104 - Hydrogenase maturation protease (EC 3.4.24.-), at 113,428 to 113,922 GFF3104 GFF3105 - Uptake hydrogenase large subunit (EC 1.12.99.6), at 113,922 to 115,625 GFF3105 GFF3106 - Ni/Fe-hydrogenase 2 B-type cytochrome subunit, at 115,622 to 116,800 GFF3106 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -1 0 1at 113.031 kb on + strand, within GFF3103at 113.325 kb on - strand, within GFF3103at 113.834 kb on + strand, within GFF3104at 113.911 kb on + strandat 113.924 kb on - strandat 114.015 kb on + strandat 114.016 kb on - strandat 114.098 kb on + strand, within GFF3105at 114.099 kb on - strand, within GFF3105at 114.139 kb on + strand, within GFF3105at 114.139 kb on + strand, within GFF3105at 114.144 kb on - strand, within GFF3105at 114.150 kb on - strand, within GFF3105at 114.278 kb on + strand, within GFF3105at 114.282 kb on + strand, within GFF3105at 114.283 kb on - strand, within GFF3105at 114.298 kb on + strand, within GFF3105at 114.312 kb on + strand, within GFF3105at 114.312 kb on + strand, within GFF3105at 114.366 kb on - strand, within GFF3105at 114.542 kb on - strand, within GFF3105at 114.542 kb on - strand, within GFF3105at 114.542 kb on - strand, within GFF3105at 114.713 kb on + strand, within GFF3105at 114.718 kb on + strand, within GFF3105at 114.820 kb on + strand, within GFF3105at 114.852 kb on - strand, within GFF3105at 114.854 kb on - strand, within GFF3105at 114.901 kb on + strand, within GFF3105at 114.926 kb on + strand, within GFF3105at 114.983 kb on + strand, within GFF3105at 115.054 kb on + strand, within GFF3105at 115.054 kb on + strand, within GFF3105at 115.130 kb on + strand, within GFF3105at 115.131 kb on - strand, within GFF3105at 115.135 kb on - strand, within GFF3105at 115.346 kb on + strand, within GFF3105at 115.356 kb on - strand, within GFF3105at 115.357 kb on + strand, within GFF3105at 115.357 kb on + strand, within GFF3105at 115.358 kb on - strand, within GFF3105at 115.449 kb on - strand, within GFF3105at 115.449 kb on - strand, within GFF3105at 115.608 kb on - strandat 115.704 kb on + strandat 115.704 kb on + strandat 115.704 kb on + strandat 115.705 kb on - strandat 115.705 kb on - strandat 115.735 kb on + strandat 115.864 kb on + strand, within GFF3106at 115.876 kb on + strand, within GFF3106at 115.990 kb on - strand, within GFF3106at 116.045 kb on - strand, within GFF3106at 116.123 kb on + strand, within GFF3106at 116.124 kb on - strand, within GFF3106at 116.184 kb on + strand, within GFF3106at 116.211 kb on + strand, within GFF3106at 116.379 kb on + strand, within GFF3106at 116.379 kb on + strand, within GFF3106at 116.379 kb on + strand, within GFF3106at 116.379 kb on + strand, within GFF3106at 116.380 kb on - strand, within GFF3106at 116.442 kb on + strand, within GFF3106at 116.442 kb on + strand, within GFF3106at 116.443 kb on - strand, within GFF3106at 116.448 kb on + strand, within GFF3106at 116.480 kb on - strand, within GFF3106at 116.551 kb on - strand, within GFF3106at 116.572 kb on - strand, within GFF3106

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
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113,031 + GFF3103 0.17 +0.9
113,325 - GFF3103 0.77 -0.0
113,834 + GFF3104 0.82 +0.2
113,911 + +0.0
113,924 - -0.1
114,015 + -0.0
114,016 - +0.3
114,098 + GFF3105 0.10 -0.1
114,099 - GFF3105 0.10 +0.1
114,139 + GFF3105 0.13 +0.4
114,139 + GFF3105 0.13 +0.3
114,144 - GFF3105 0.13 +1.1
114,150 - GFF3105 0.13 +0.1
114,278 + GFF3105 0.21 -0.3
114,282 + GFF3105 0.21 +0.2
114,283 - GFF3105 0.21 +0.3
114,298 + GFF3105 0.22 +0.7
114,312 + GFF3105 0.23 +0.0
114,312 + GFF3105 0.23 -0.6
114,366 - GFF3105 0.26 +0.4
114,542 - GFF3105 0.36 +1.0
114,542 - GFF3105 0.36 +0.4
114,542 - GFF3105 0.36 +0.2
114,713 + GFF3105 0.46 +0.3
114,718 + GFF3105 0.47 +0.4
114,820 + GFF3105 0.53 +0.3
114,852 - GFF3105 0.55 -0.0
114,854 - GFF3105 0.55 -0.2
114,901 + GFF3105 0.57 -0.1
114,926 + GFF3105 0.59 +0.7
114,983 + GFF3105 0.62 +0.4
115,054 + GFF3105 0.66 -0.0
115,054 + GFF3105 0.66 +0.0
115,130 + GFF3105 0.71 -0.3
115,131 - GFF3105 0.71 +0.1
115,135 - GFF3105 0.71 +0.7
115,346 + GFF3105 0.84 -0.2
115,356 - GFF3105 0.84 +0.5
115,357 + GFF3105 0.84 +0.4
115,357 + GFF3105 0.84 -0.2
115,358 - GFF3105 0.84 -0.8
115,449 - GFF3105 0.90 +0.1
115,449 - GFF3105 0.90 +0.4
115,608 - -0.5
115,704 + -0.0
115,704 + +0.0
115,704 + -0.5
115,705 - -0.2
115,705 - +0.0
115,735 + +0.4
115,864 + GFF3106 0.21 -0.0
115,876 + GFF3106 0.22 -0.7
115,990 - GFF3106 0.31 +0.5
116,045 - GFF3106 0.36 +0.6
116,123 + GFF3106 0.42 +0.3
116,124 - GFF3106 0.43 +0.3
116,184 + GFF3106 0.48 +0.2
116,211 + GFF3106 0.50 +0.2
116,379 + GFF3106 0.64 -0.2
116,379 + GFF3106 0.64 +0.1
116,379 + GFF3106 0.64 +0.2
116,379 + GFF3106 0.64 +1.0
116,380 - GFF3106 0.64 +0.1
116,442 + GFF3106 0.70 +0.1
116,442 + GFF3106 0.70 -1.5
116,443 - GFF3106 0.70 -1.0
116,448 + GFF3106 0.70 +0.2
116,480 - GFF3106 0.73 +0.0
116,551 - GFF3106 0.79 +0.3
116,572 - GFF3106 0.81 -0.3

Or see this region's nucleotide sequence