Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF304

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF303 and GFF304 are separated by 74 nucleotidesGFF304 and GFF305 overlap by 1 nucleotides GFF303 - Putative uncharacterized protein STY3991, at 20,846 to 21,859 GFF303 GFF304 - Transcriptional regulatory protein UhpA, at 21,934 to 22,524 GFF304 GFF305 - Sensor histidine protein kinase UhpB, glucose-6-phosphate specific (EC 2.7.13.3), at 22,524 to 24,026 GFF305 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 21.104 kb on + strand, within GFF303at 21.104 kb on + strand, within GFF303at 21.105 kb on - strand, within GFF303at 21.163 kb on + strand, within GFF303at 21.163 kb on + strand, within GFF303at 21.261 kb on - strand, within GFF303at 21.261 kb on - strand, within GFF303at 21.314 kb on - strand, within GFF303at 21.383 kb on + strand, within GFF303at 21.383 kb on + strand, within GFF303at 21.384 kb on - strand, within GFF303at 21.384 kb on - strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.401 kb on + strand, within GFF303at 21.402 kb on - strand, within GFF303at 21.402 kb on - strand, within GFF303at 21.407 kb on + strand, within GFF303at 21.407 kb on + strand, within GFF303at 21.611 kb on + strand, within GFF303at 21.714 kb on - strand, within GFF303at 21.714 kb on - strand, within GFF303at 21.899 kb on + strandat 22.077 kb on - strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.082 kb on + strand, within GFF304at 22.083 kb on - strand, within GFF304at 22.096 kb on - strand, within GFF304at 22.110 kb on + strand, within GFF304at 22.233 kb on + strand, within GFF304at 22.273 kb on - strand, within GFF304at 22.273 kb on - strand, within GFF304at 22.294 kb on + strand, within GFF304at 22.295 kb on - strand, within GFF304at 22.397 kb on + strand, within GFF304at 22.522 kb on + strandat 22.523 kb on - strandat 22.676 kb on + strand, within GFF305at 22.677 kb on - strand, within GFF305at 22.737 kb on + strand, within GFF305at 22.858 kb on + strand, within GFF305at 23.005 kb on - strand, within GFF305at 23.019 kb on - strand, within GFF305at 23.153 kb on + strand, within GFF305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
remove
21,104 + GFF303 0.25 -0.3
21,104 + GFF303 0.25 -0.0
21,105 - GFF303 0.26 -0.5
21,163 + GFF303 0.31 -0.2
21,163 + GFF303 0.31 +0.1
21,261 - GFF303 0.41 -0.3
21,261 - GFF303 0.41 +0.6
21,314 - GFF303 0.46 +0.4
21,383 + GFF303 0.53 +0.1
21,383 + GFF303 0.53 +0.0
21,384 - GFF303 0.53 -0.3
21,384 - GFF303 0.53 -0.3
21,401 + GFF303 0.55 +0.1
21,401 + GFF303 0.55 +0.4
21,401 + GFF303 0.55 +0.7
21,402 - GFF303 0.55 -0.0
21,402 - GFF303 0.55 +0.5
21,407 + GFF303 0.55 -0.2
21,407 + GFF303 0.55 -0.3
21,611 + GFF303 0.75 -0.2
21,714 - GFF303 0.86 +0.3
21,714 - GFF303 0.86 -0.1
21,899 + +0.6
22,077 - GFF304 0.24 +0.3
22,082 + GFF304 0.25 -0.7
22,082 + GFF304 0.25 -0.4
22,082 + GFF304 0.25 +0.0
22,082 + GFF304 0.25 -0.0
22,083 - GFF304 0.25 -0.3
22,096 - GFF304 0.27 -0.5
22,110 + GFF304 0.30 +0.2
22,233 + GFF304 0.51 -0.2
22,273 - GFF304 0.57 -0.1
22,273 - GFF304 0.57 -0.1
22,294 + GFF304 0.61 -0.4
22,295 - GFF304 0.61 -0.2
22,397 + GFF304 0.78 -0.2
22,522 + -0.1
22,523 - -0.1
22,676 + GFF305 0.10 +0.8
22,677 - GFF305 0.10 -1.0
22,737 + GFF305 0.14 -0.8
22,858 + GFF305 0.22 +0.1
23,005 - GFF305 0.32 -0.4
23,019 - GFF305 0.33 -0.4
23,153 + GFF305 0.42 -0.6

Or see this region's nucleotide sequence