Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2738

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2736 and GFF2737 are separated by 223 nucleotidesGFF2737 and GFF2738 are separated by 43 nucleotidesGFF2738 and GFF2739 are separated by 178 nucleotides GFF2736 - Ferric siderophore transport system, periplasmic binding protein TonB, at 256,878 to 257,606 GFF2736 GFF2737 - YciL protein, at 257,830 to 258,126 GFF2737 GFF2738 - hypothetical protein, at 258,170 to 258,307 GFF2738 GFF2739 - Cardiolipin synthetase (EC 2.7.8.-), at 258,486 to 259,946 GFF2739 Position (kb) 258 259Strain fitness (log2 ratio) -1 0 1at 257.593 kb on - strandat 257.700 kb on - strandat 257.836 kb on + strandat 257.845 kb on + strandat 257.940 kb on - strand, within GFF2737at 257.973 kb on + strand, within GFF2737at 258.110 kb on - strandat 258.236 kb on - strand, within GFF2738at 258.236 kb on - strand, within GFF2738at 258.248 kb on - strand, within GFF2738at 258.335 kb on - strandat 258.618 kb on + strandat 259.182 kb on + strand, within GFF2739

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
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257,593 - +0.2
257,700 - +0.6
257,836 + -0.7
257,845 + +0.9
257,940 - GFF2737 0.37 +0.2
257,973 + GFF2737 0.48 -0.5
258,110 - +0.0
258,236 - GFF2738 0.48 +0.0
258,236 - GFF2738 0.48 -0.1
258,248 - GFF2738 0.57 +0.0
258,335 - +0.4
258,618 + +0.3
259,182 + GFF2739 0.48 -0.7

Or see this region's nucleotide sequence