Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF214

Experiment: LB_plus_SM_buffer with Ffm_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF213 and GFF214 are separated by 18 nucleotidesGFF214 and GFF215 are separated by 640 nucleotides GFF213 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 208,816 to 212,043 GFF213 GFF214 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 212,062 to 213,210 GFF214 GFF215 - FIG01046809: hypothetical protein, at 213,851 to 214,126 GFF215 Position (kb) 212 213 214Strain fitness (log2 ratio) -1 0 1at 211.591 kb on - strand, within GFF213at 211.671 kb on + strand, within GFF213at 211.850 kb on + strandat 211.941 kb on + strandat 211.942 kb on - strandat 211.962 kb on - strandat 212.024 kb on - strandat 212.031 kb on + strandat 212.031 kb on + strandat 212.063 kb on + strandat 212.081 kb on + strandat 212.091 kb on + strandat 212.092 kb on - strandat 212.314 kb on - strand, within GFF214at 212.359 kb on - strand, within GFF214at 212.390 kb on - strand, within GFF214at 212.590 kb on - strand, within GFF214at 212.751 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.046 kb on - strand, within GFF214at 213.046 kb on - strand, within GFF214at 213.961 kb on - strand, within GFF215at 213.961 kb on - strand, within GFF215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 1.875 MOI
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211,591 - GFF213 0.86 -0.2
211,671 + GFF213 0.88 -0.4
211,850 + -0.3
211,941 + -0.8
211,942 - -0.4
211,962 - -0.2
212,024 - -1.6
212,031 + -0.8
212,031 + -1.1
212,063 + -0.2
212,081 + -0.7
212,091 + -0.5
212,092 - -0.5
212,314 - GFF214 0.22 -0.4
212,359 - GFF214 0.26 +0.0
212,390 - GFF214 0.29 -0.1
212,590 - GFF214 0.46 +0.2
212,751 + GFF214 0.60 -0.5
213,045 + GFF214 0.86 -1.5
213,045 + GFF214 0.86 -0.9
213,045 + GFF214 0.86 -0.5
213,045 + GFF214 0.86 -0.5
213,045 + GFF214 0.86 -0.1
213,046 - GFF214 0.86 -0.6
213,046 - GFF214 0.86 -1.3
213,961 - GFF215 0.40 +0.2
213,961 - GFF215 0.40 -0.1

Or see this region's nucleotide sequence