Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04153 and ECD_04154 are separated by 0 nucleotides ECD_04154 and ECD_04155 overlap by 4 nucleotides ECD_04155 and ECD_04156 overlap by 4 nucleotides ECD_04156 and ECD_04157 are separated by 44 nucleotides
ECD_04153: ECD_04153 - ferric citrate ABC transporter ATPase, at 4,424,087 to 4,424,854
_04153
ECD_04154: ECD_04154 - ferric citrate ABC transporter permease, at 4,424,855 to 4,425,811
_04154
ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806
_04155
ECD_04156: ECD_04156 - ferric citrate ABC transporter periplasmic binding protein, at 4,426,803 to 4,427,705
_04156
ECD_04157: ECD_04157 - TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein, at 4,427,750 to 4,430,074
_04157
Position (kb)
4425
4426
4427 Strain fitness (log2 ratio)
-1
0
1 at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.945 kb on - strand at 4424.945 kb on - strand at 4425.046 kb on + strand, within ECD_04154 at 4425.047 kb on - strand, within ECD_04154 at 4425.101 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.123 kb on - strand, within ECD_04154 at 4425.288 kb on - strand, within ECD_04154 at 4425.440 kb on + strand, within ECD_04154 at 4425.505 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.513 kb on - strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.675 kb on - strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.682 kb on - strand, within ECD_04154 at 4425.755 kb on + strand at 4425.793 kb on + strand at 4425.910 kb on + strand, within ECD_04155 at 4425.911 kb on - strand, within ECD_04155 at 4425.962 kb on - strand, within ECD_04155 at 4426.073 kb on - strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.093 kb on + strand, within ECD_04155 at 4426.120 kb on - strand, within ECD_04155 at 4426.271 kb on + strand, within ECD_04155 at 4426.318 kb on - strand, within ECD_04155 at 4426.318 kb on - strand, within ECD_04155 at 4426.451 kb on + strand, within ECD_04155 at 4426.485 kb on + strand, within ECD_04155 at 4426.515 kb on + strand, within ECD_04155 at 4426.752 kb on + strand at 4426.752 kb on + strand at 4426.752 kb on + strand at 4427.226 kb on - strand, within ECD_04156 at 4427.226 kb on - strand, within ECD_04156 at 4427.226 kb on - strand, within ECD_04156 at 4427.327 kb on + strand, within ECD_04156 at 4427.365 kb on + strand, within ECD_04156 at 4427.365 kb on + strand, within ECD_04156 at 4427.526 kb on - strand, within ECD_04156 at 4427.613 kb on - strand, within ECD_04156 at 4427.705 kb on + strand at 4427.705 kb on + strand at 4427.705 kb on + strand at 4427.706 kb on - strand at 4427.706 kb on - strand at 4427.706 kb on - strand at 4427.721 kb on - strand at 4427.773 kb on + strand at 4427.773 kb on + strand at 4427.775 kb on + strand at 4427.775 kb on + strand at 4427.775 kb on + strand at 4427.776 kb on - strand at 4427.776 kb on - strand at 4427.799 kb on + strand at 4427.799 kb on + strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 4,424,944 + -0.8 4,424,944 + +0.0 4,424,944 + +0.1 4,424,945 - -0.4 4,424,945 - +0.3 4,425,046 + ECD_04154 0.20 -0.1 4,425,047 - ECD_04154 0.20 -0.2 4,425,101 - ECD_04154 0.26 -0.0 4,425,120 - ECD_04154 0.28 +1.5 4,425,120 - ECD_04154 0.28 +0.0 4,425,123 - ECD_04154 0.28 -0.2 4,425,288 - ECD_04154 0.45 -0.2 4,425,440 + ECD_04154 0.61 +0.1 4,425,505 + ECD_04154 0.68 +0.1 4,425,512 + ECD_04154 0.69 +0.7 4,425,512 + ECD_04154 0.69 +0.7 4,425,513 - ECD_04154 0.69 -0.3 4,425,674 + ECD_04154 0.86 -0.1 4,425,674 + ECD_04154 0.86 +0.8 4,425,675 - ECD_04154 0.86 -0.3 4,425,678 + ECD_04154 0.86 +0.5 4,425,678 + ECD_04154 0.86 +1.5 4,425,678 + ECD_04154 0.86 +0.1 4,425,678 + ECD_04154 0.86 +0.5 4,425,678 + ECD_04154 0.86 +1.3 4,425,678 + ECD_04154 0.86 -0.1 4,425,678 + ECD_04154 0.86 -0.3 4,425,679 - ECD_04154 0.86 -0.2 4,425,679 - ECD_04154 0.86 -0.0 4,425,679 - ECD_04154 0.86 -1.6 4,425,681 + ECD_04154 0.86 +0.2 4,425,681 + ECD_04154 0.86 -0.0 4,425,681 + ECD_04154 0.86 +0.4 4,425,682 - ECD_04154 0.86 +0.7 4,425,755 + -0.7 4,425,793 + -0.7 4,425,910 + ECD_04155 0.10 +1.1 4,425,911 - ECD_04155 0.10 -0.8 4,425,962 - ECD_04155 0.15 -0.4 4,426,073 - ECD_04155 0.27 -0.1 4,426,077 + ECD_04155 0.27 -0.0 4,426,077 + ECD_04155 0.27 -1.1 4,426,077 + ECD_04155 0.27 +0.6 4,426,077 + ECD_04155 0.27 -1.4 4,426,077 + ECD_04155 0.27 +0.3 4,426,078 - ECD_04155 0.27 +0.2 4,426,078 - ECD_04155 0.27 -0.5 4,426,078 - ECD_04155 0.27 -1.0 4,426,078 - ECD_04155 0.27 -0.5 4,426,078 - ECD_04155 0.27 +0.3 4,426,093 + ECD_04155 0.29 -0.5 4,426,120 - ECD_04155 0.31 -0.5 4,426,271 + ECD_04155 0.46 -0.5 4,426,318 - ECD_04155 0.51 -0.5 4,426,318 - ECD_04155 0.51 -0.1 4,426,451 + ECD_04155 0.64 +0.5 4,426,485 + ECD_04155 0.68 -0.7 4,426,515 + ECD_04155 0.71 -0.2 4,426,752 + +0.7 4,426,752 + +0.1 4,426,752 + -0.1 4,427,226 - ECD_04156 0.47 +1.3 4,427,226 - ECD_04156 0.47 -0.5 4,427,226 - ECD_04156 0.47 +0.3 4,427,327 + ECD_04156 0.58 -0.5 4,427,365 + ECD_04156 0.62 +0.3 4,427,365 + ECD_04156 0.62 -0.3 4,427,526 - ECD_04156 0.80 +0.1 4,427,613 - ECD_04156 0.90 +0.2 4,427,705 + +0.2 4,427,705 + -0.5 4,427,705 + -0.4 4,427,706 - +0.2 4,427,706 - +0.2 4,427,706 - -0.7 4,427,721 - -0.1 4,427,773 + -0.2 4,427,773 + +0.1 4,427,775 + +1.3 4,427,775 + +0.9 4,427,775 + +0.4 4,427,776 - +0.1 4,427,776 - +0.7 4,427,799 + +0.5 4,427,799 + +0.2 4,427,800 - -0.3 4,427,800 - -0.1 4,427,800 - -0.2 4,427,800 - -0.2 4,427,800 - -0.0
Or see this region's nucleotide sequence