Strain Fitness in Escherichia coli BL21 around ECD_04085

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04083 and ECD_04084 are separated by 88 nucleotidesECD_04084 and ECD_04085 are separated by 122 nucleotidesECD_04085 and ECD_04086 are separated by 189 nucleotidesECD_04086 and ECD_04087 overlap by 11 nucleotides ECD_04083: ECD_04083 - NAD(P)H:quinone oxidoreductase, at 4,346,529 to 4,347,389 _04083 ECD_04084: ECD_04084 - DUF24 family HxlR-type putative transcriptional regulator, at 4,347,478 to 4,347,858 _04084 ECD_04085: ECD_04085 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,347,981 to 4,349,924 _04085 ECD_04086: ECD_04086 - 3'(2'),5'-bisphosphate nucleotidase, at 4,350,114 to 4,350,854 _04086 ECD_04087: ECD_04087 - putative transcriptional regulator, at 4,350,844 to 4,351,401 _04087 Position (kb) 4347 4348 4349 4350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4346.996 kb on - strand, within ECD_04083at 4347.086 kb on + strand, within ECD_04083at 4347.088 kb on + strand, within ECD_04083at 4347.128 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.233 kb on - strand, within ECD_04083at 4347.300 kb on - strand, within ECD_04083at 4347.306 kb on + strandat 4347.307 kb on - strandat 4347.341 kb on + strandat 4347.341 kb on + strandat 4347.342 kb on - strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.419 kb on + strandat 4347.423 kb on + strandat 4347.424 kb on - strandat 4347.468 kb on + strandat 4347.609 kb on + strand, within ECD_04084at 4347.610 kb on - strand, within ECD_04084at 4347.686 kb on + strand, within ECD_04084at 4347.745 kb on + strand, within ECD_04084at 4347.856 kb on + strandat 4347.898 kb on + strandat 4347.960 kb on - strandat 4347.980 kb on - strandat 4347.980 kb on - strandat 4347.982 kb on + strandat 4347.982 kb on + strandat 4347.983 kb on - strandat 4348.003 kb on + strandat 4348.049 kb on - strandat 4348.082 kb on + strandat 4348.155 kb on - strandat 4348.294 kb on + strand, within ECD_04085at 4348.294 kb on + strand, within ECD_04085at 4348.298 kb on + strand, within ECD_04085at 4348.361 kb on + strand, within ECD_04085at 4348.465 kb on + strand, within ECD_04085at 4348.465 kb on + strand, within ECD_04085at 4348.599 kb on - strand, within ECD_04085at 4348.607 kb on - strand, within ECD_04085at 4348.663 kb on + strand, within ECD_04085at 4348.663 kb on + strand, within ECD_04085at 4348.664 kb on - strand, within ECD_04085at 4348.756 kb on + strand, within ECD_04085at 4348.757 kb on - strand, within ECD_04085at 4348.768 kb on + strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.829 kb on - strand, within ECD_04085at 4348.832 kb on + strand, within ECD_04085at 4348.832 kb on + strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.833 kb on - strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.834 kb on + strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.835 kb on - strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.838 kb on + strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085at 4348.839 kb on - strand, within ECD_04085at 4348.960 kb on + strand, within ECD_04085at 4348.961 kb on - strand, within ECD_04085at 4349.003 kb on + strand, within ECD_04085at 4349.004 kb on - strand, within ECD_04085at 4349.015 kb on + strand, within ECD_04085at 4349.016 kb on - strand, within ECD_04085at 4349.016 kb on - strand, within ECD_04085at 4349.016 kb on - strand, within ECD_04085at 4349.025 kb on + strand, within ECD_04085at 4349.165 kb on + strand, within ECD_04085at 4349.165 kb on + strand, within ECD_04085at 4349.165 kb on + strand, within ECD_04085at 4349.198 kb on - strand, within ECD_04085at 4349.302 kb on + strand, within ECD_04085at 4349.322 kb on - strand, within ECD_04085at 4349.397 kb on - strand, within ECD_04085at 4349.398 kb on + strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.454 kb on - strand, within ECD_04085at 4349.458 kb on - strand, within ECD_04085at 4349.461 kb on + strand, within ECD_04085at 4349.462 kb on - strand, within ECD_04085at 4349.511 kb on + strand, within ECD_04085at 4349.511 kb on + strand, within ECD_04085at 4349.512 kb on - strand, within ECD_04085at 4349.512 kb on - strand, within ECD_04085at 4349.567 kb on + strand, within ECD_04085at 4349.598 kb on - strand, within ECD_04085at 4349.622 kb on - strand, within ECD_04085at 4349.668 kb on + strand, within ECD_04085at 4349.669 kb on - strand, within ECD_04085at 4349.669 kb on - strand, within ECD_04085at 4349.763 kb on - strandat 4349.801 kb on - strandat 4349.825 kb on + strandat 4349.849 kb on + strandat 4349.849 kb on + strandat 4349.850 kb on - strandat 4349.853 kb on + strandat 4349.853 kb on + strandat 4349.854 kb on - strandat 4349.854 kb on - strandat 4349.854 kb on - strandat 4349.939 kb on + strandat 4349.940 kb on - strandat 4349.940 kb on - strandat 4349.940 kb on - strandat 4349.970 kb on + strandat 4349.983 kb on + strandat 4349.984 kb on - strandat 4349.986 kb on - strandat 4349.986 kb on - strandat 4350.033 kb on + strandat 4350.161 kb on + strandat 4350.171 kb on + strandat 4350.269 kb on - strand, within ECD_04086at 4350.269 kb on - strand, within ECD_04086at 4350.377 kb on + strand, within ECD_04086at 4350.378 kb on - strand, within ECD_04086at 4350.386 kb on + strand, within ECD_04086at 4350.395 kb on + strand, within ECD_04086at 4350.460 kb on - strand, within ECD_04086at 4350.478 kb on + strand, within ECD_04086at 4350.478 kb on + strand, within ECD_04086at 4350.479 kb on - strand, within ECD_04086at 4350.484 kb on - strand, within ECD_04086

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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4,346,996 - ECD_04083 0.54 +0.7
4,347,086 + ECD_04083 0.65 -0.0
4,347,088 + ECD_04083 0.65 -0.7
4,347,128 + ECD_04083 0.70 +0.4
4,347,134 + ECD_04083 0.70 -0.6
4,347,134 + ECD_04083 0.70 +0.1
4,347,233 - ECD_04083 0.82 +0.1
4,347,300 - ECD_04083 0.90 +0.3
4,347,306 + -0.2
4,347,307 - -0.3
4,347,341 + -0.4
4,347,341 + +0.2
4,347,342 - +0.4
4,347,349 + +1.0
4,347,349 + -0.2
4,347,349 + +0.2
4,347,350 - +0.3
4,347,350 - +0.1
4,347,350 - +0.2
4,347,350 - -0.7
4,347,350 - +0.0
4,347,419 + +0.1
4,347,423 + +1.1
4,347,424 - -0.2
4,347,468 + +0.3
4,347,609 + ECD_04084 0.34 -0.4
4,347,610 - ECD_04084 0.35 -0.1
4,347,686 + ECD_04084 0.55 +0.7
4,347,745 + ECD_04084 0.70 +0.0
4,347,856 + +0.7
4,347,898 + -0.2
4,347,960 - -0.3
4,347,980 - -1.0
4,347,980 - -0.4
4,347,982 + +0.8
4,347,982 + +0.0
4,347,983 - +0.1
4,348,003 + +2.1
4,348,049 - +0.2
4,348,082 + -0.4
4,348,155 - -0.4
4,348,294 + ECD_04085 0.16 +0.3
4,348,294 + ECD_04085 0.16 +1.1
4,348,298 + ECD_04085 0.16 +0.3
4,348,361 + ECD_04085 0.20 -0.5
4,348,465 + ECD_04085 0.25 +0.6
4,348,465 + ECD_04085 0.25 -0.3
4,348,599 - ECD_04085 0.32 -0.9
4,348,607 - ECD_04085 0.32 -1.3
4,348,663 + ECD_04085 0.35 +0.5
4,348,663 + ECD_04085 0.35 -0.3
4,348,664 - ECD_04085 0.35 -0.1
4,348,756 + ECD_04085 0.40 -0.7
4,348,757 - ECD_04085 0.40 +0.6
4,348,768 + ECD_04085 0.40 +0.1
4,348,829 - ECD_04085 0.44 -0.2
4,348,829 - ECD_04085 0.44 +0.1
4,348,829 - ECD_04085 0.44 -0.1
4,348,829 - ECD_04085 0.44 -0.7
4,348,829 - ECD_04085 0.44 -0.7
4,348,832 + ECD_04085 0.44 -1.1
4,348,832 + ECD_04085 0.44 -0.3
4,348,833 - ECD_04085 0.44 -0.0
4,348,833 - ECD_04085 0.44 -0.7
4,348,833 - ECD_04085 0.44 +0.3
4,348,833 - ECD_04085 0.44 -0.5
4,348,833 - ECD_04085 0.44 +1.2
4,348,833 - ECD_04085 0.44 -0.8
4,348,833 - ECD_04085 0.44 +1.1
4,348,834 + ECD_04085 0.44 +0.1
4,348,834 + ECD_04085 0.44 +0.1
4,348,834 + ECD_04085 0.44 -0.3
4,348,834 + ECD_04085 0.44 -0.8
4,348,834 + ECD_04085 0.44 -0.4
4,348,834 + ECD_04085 0.44 -0.4
4,348,834 + ECD_04085 0.44 -0.0
4,348,834 + ECD_04085 0.44 -0.4
4,348,834 + ECD_04085 0.44 -0.1
4,348,834 + ECD_04085 0.44 -0.2
4,348,834 + ECD_04085 0.44 +1.2
4,348,835 - ECD_04085 0.44 +0.2
4,348,835 - ECD_04085 0.44 +0.1
4,348,835 - ECD_04085 0.44 +0.3
4,348,835 - ECD_04085 0.44 -0.0
4,348,835 - ECD_04085 0.44 +0.4
4,348,835 - ECD_04085 0.44 +0.6
4,348,835 - ECD_04085 0.44 -0.4
4,348,835 - ECD_04085 0.44 -0.1
4,348,835 - ECD_04085 0.44 +0.6
4,348,835 - ECD_04085 0.44 +0.4
4,348,835 - ECD_04085 0.44 +1.5
4,348,835 - ECD_04085 0.44 -2.1
4,348,835 - ECD_04085 0.44 -0.0
4,348,835 - ECD_04085 0.44 +0.1
4,348,835 - ECD_04085 0.44 -0.4
4,348,835 - ECD_04085 0.44 +1.2
4,348,835 - ECD_04085 0.44 -0.4
4,348,835 - ECD_04085 0.44 -0.9
4,348,835 - ECD_04085 0.44 +0.3
4,348,835 - ECD_04085 0.44 +0.5
4,348,835 - ECD_04085 0.44 -0.5
4,348,835 - ECD_04085 0.44 -0.6
4,348,835 - ECD_04085 0.44 -0.6
4,348,835 - ECD_04085 0.44 +0.7
4,348,835 - ECD_04085 0.44 -0.1
4,348,835 - ECD_04085 0.44 -0.5
4,348,838 + ECD_04085 0.44 -0.1
4,348,838 + ECD_04085 0.44 +0.6
4,348,838 + ECD_04085 0.44 +0.3
4,348,838 + ECD_04085 0.44 -0.7
4,348,839 - ECD_04085 0.44 +0.5
4,348,839 - ECD_04085 0.44 -0.0
4,348,839 - ECD_04085 0.44 +0.0
4,348,960 + ECD_04085 0.50 +0.2
4,348,961 - ECD_04085 0.50 -0.4
4,349,003 + ECD_04085 0.53 -1.1
4,349,004 - ECD_04085 0.53 -0.1
4,349,015 + ECD_04085 0.53 +0.6
4,349,016 - ECD_04085 0.53 -0.0
4,349,016 - ECD_04085 0.53 +0.0
4,349,016 - ECD_04085 0.53 +1.0
4,349,025 + ECD_04085 0.54 -0.1
4,349,165 + ECD_04085 0.61 +0.4
4,349,165 + ECD_04085 0.61 +0.6
4,349,165 + ECD_04085 0.61 -0.3
4,349,198 - ECD_04085 0.63 +1.2
4,349,302 + ECD_04085 0.68 -0.2
4,349,322 - ECD_04085 0.69 +0.2
4,349,397 - ECD_04085 0.73 +0.4
4,349,398 + ECD_04085 0.73 +1.0
4,349,454 - ECD_04085 0.76 +0.1
4,349,454 - ECD_04085 0.76 +0.9
4,349,454 - ECD_04085 0.76 +0.1
4,349,458 - ECD_04085 0.76 -0.8
4,349,461 + ECD_04085 0.76 -0.3
4,349,462 - ECD_04085 0.76 +0.5
4,349,511 + ECD_04085 0.79 +0.4
4,349,511 + ECD_04085 0.79 +0.0
4,349,512 - ECD_04085 0.79 +0.0
4,349,512 - ECD_04085 0.79 -1.0
4,349,567 + ECD_04085 0.82 -1.8
4,349,598 - ECD_04085 0.83 +1.1
4,349,622 - ECD_04085 0.84 -0.2
4,349,668 + ECD_04085 0.87 -0.6
4,349,669 - ECD_04085 0.87 +0.5
4,349,669 - ECD_04085 0.87 +0.1
4,349,763 - -0.2
4,349,801 - -0.2
4,349,825 + -0.1
4,349,849 + +1.2
4,349,849 + +0.7
4,349,850 - +0.4
4,349,853 + -0.2
4,349,853 + -0.1
4,349,854 - -0.1
4,349,854 - -0.4
4,349,854 - -0.0
4,349,939 + -0.0
4,349,940 - -0.0
4,349,940 - -1.0
4,349,940 - +0.8
4,349,970 + -0.2
4,349,983 + +1.3
4,349,984 - +0.4
4,349,986 - -0.3
4,349,986 - -0.7
4,350,033 + +0.1
4,350,161 + -1.4
4,350,171 + -1.3
4,350,269 - ECD_04086 0.21 -0.5
4,350,269 - ECD_04086 0.21 -0.3
4,350,377 + ECD_04086 0.35 -0.4
4,350,378 - ECD_04086 0.36 -1.7
4,350,386 + ECD_04086 0.37 -1.8
4,350,395 + ECD_04086 0.38 -0.5
4,350,460 - ECD_04086 0.47 -1.5
4,350,478 + ECD_04086 0.49 -1.7
4,350,478 + ECD_04086 0.49 -2.3
4,350,479 - ECD_04086 0.49 -2.8
4,350,484 - ECD_04086 0.50 +0.2

Or see this region's nucleotide sequence