Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04047 and ECD_04048 are separated by 126 nucleotides ECD_04048 and ECD_04049 are separated by 18 nucleotides ECD_04049 and ECD_04050 are separated by 50 nucleotides
ECD_04047: ECD_04047 - 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent, at 4,315,795 to 4,316,526
_04047
ECD_04048: ECD_04048 - DUF2170 family protein, at 4,316,653 to 4,317,054
_04048
ECD_04049: ECD_04049 - PspA/IM30 family protein, at 4,317,073 to 4,317,771
_04049
ECD_04050: ECD_04050 - DUF2491 family protein, at 4,317,822 to 4,318,481
_04050
Position (kb) 4316
4317
4318 Strain fitness (log2 ratio) -1
0
1 at 4315.704 kb on + strand at 4315.708 kb on + strand at 4315.708 kb on + strand at 4315.725 kb on + strand at 4315.743 kb on + strand at 4315.743 kb on + strand at 4315.758 kb on + strand at 4315.758 kb on + strand at 4315.759 kb on - strand at 4315.788 kb on + strand at 4315.789 kb on - strand at 4315.811 kb on - strand at 4315.873 kb on - strand, within ECD_04047 at 4315.894 kb on - strand, within ECD_04047 at 4316.137 kb on - strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.280 kb on + strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.281 kb on - strand, within ECD_04047 at 4316.334 kb on + strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.335 kb on - strand, within ECD_04047 at 4316.341 kb on + strand, within ECD_04047 at 4316.342 kb on - strand, within ECD_04047 at 4316.398 kb on - strand, within ECD_04047 at 4316.832 kb on + strand, within ECD_04048 at 4316.935 kb on + strand, within ECD_04048 at 4317.328 kb on - strand, within ECD_04049 at 4317.737 kb on + strand at 4317.737 kb on + strand at 4317.741 kb on - strand at 4317.860 kb on + strand at 4318.035 kb on + strand, within ECD_04050 at 4318.038 kb on + strand, within ECD_04050 at 4318.039 kb on - strand, within ECD_04050
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 4,315,704 + -0.1 4,315,708 + +0.5 4,315,708 + +0.7 4,315,725 + -0.1 4,315,743 + -0.2 4,315,743 + +0.1 4,315,758 + -0.4 4,315,758 + +0.3 4,315,759 - -0.9 4,315,788 + +0.2 4,315,789 - +0.3 4,315,811 - -0.8 4,315,873 - ECD_04047 0.11 +0.2 4,315,894 - ECD_04047 0.14 +0.7 4,316,137 - ECD_04047 0.47 +0.1 4,316,280 + ECD_04047 0.66 +0.2 4,316,280 + ECD_04047 0.66 -0.9 4,316,280 + ECD_04047 0.66 +0.1 4,316,281 - ECD_04047 0.66 -0.2 4,316,281 - ECD_04047 0.66 -0.2 4,316,281 - ECD_04047 0.66 -0.5 4,316,281 - ECD_04047 0.66 +1.0 4,316,334 + ECD_04047 0.74 -0.3 4,316,335 - ECD_04047 0.74 +0.0 4,316,335 - ECD_04047 0.74 -0.5 4,316,335 - ECD_04047 0.74 -0.0 4,316,335 - ECD_04047 0.74 +0.2 4,316,341 + ECD_04047 0.75 +0.9 4,316,342 - ECD_04047 0.75 +0.0 4,316,398 - ECD_04047 0.82 +0.6 4,316,832 + ECD_04048 0.45 -1.0 4,316,935 + ECD_04048 0.70 +0.6 4,317,328 - ECD_04049 0.36 -0.0 4,317,737 + +0.3 4,317,737 + -0.6 4,317,741 - +0.4 4,317,860 + +0.4 4,318,035 + ECD_04050 0.32 -0.4 4,318,038 + ECD_04050 0.33 +0.5 4,318,039 - ECD_04050 0.33 +1.2
Or see this region's nucleotide sequence